TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTAATGTCTAAGTCTAGTGAGGTTCCAGGAACCTCTTGCTTCCT
CCTCACAGTGCTAAAAGTACAAGCACACACTGTACTTTTTAGGTTGGTGC
CAGGGATCAGATTCAATTTTTGTATTTGTGAAACTACTCTACCCATGAAG
CCCTCTCCTCCACTCAGGAGGTAGTGTTTTTATCATCTACTGTAGAGATG
AAGGACTGCTATAGAGCTTGGATTTAAACCTAGACAACTGCCCCTTTGTC
CACAGTCAAAGCCAAAGCCAAAGCCATTGCAAACACTTTTTGCTGTGCTG
AGTGCTACCCACAACTGTTCTCACACGGTGCTCTACTGCTTCCCGAAGAA
GGAGAAACGCTGGAGGCCACTTCTTTCCATTTTACATTATGGATCAGCAA
AGTATTCGGAAAAGCAGCTGCTGAATTCACAAGGAGAAAAGGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGNNTNNNTTNNNNTNTTTTTT
TTTTTTTTTTTTTTTTCCTNTTTTTTTTTTTTTTTTGGGTTTTTTTTTTT
TTTTTTTNTTTTTTTNTTTTTTTTCTTTTTCTCCCTTTTTTTTTTTGTTT
TCTTTTTTTCCGTCCTCCTTTCCCCCCCTCCTTTTCTTCCCTCCCTTGCC
CTTCCTCTTCCCCTCCTCCTCCCTCCTCCCCTTTGCTTCCCTCTTCCCCT
CCCCCTCCCC

CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTAAACCTTGCTCCATCTTTCTGG
ACCATTGGAAGGTGAGCTCCTGCTAGGTAGACTGCCCTGACATCTTAGAA
TCCCTTGTTCTTGCCTCTGTCCCACAGCAGGAGTCATCACACTACTCTGG
CCACTCCAGCATGTGTCCCTATTCTCTGGGCAGATACAGGGTATTTATGG
ATGTCTATGCTGGAAGTTCTTGTGGGTAAGGAAATGTTTGAGAGTAGGAG
AGCCCACACTGGATGTTTGTGGTATGGCTCGGTTTTTTCTTTCTGTTCTT
CCCAGGGCTATGAAAGTCATAATAGATATTTGCAAGGATTTAGGCAAAGA
AGACTAAAGCCCCAAGCAGAGCAGTGTGGGAGGTACACAGGAAGCCAGGG
CTCCCTCTGGCTGCTCTGCTCCTGGCATATACAGATAGTATCTTGGGCCT
CATTATCTGCTCCATGGTAACGAAGTCCCCCCTATGCTATTGACCCCTTT
AGCAAAAACTTTCTCGTCCTTGGCCTCCGCATTTTGTTCTCCATACTTTT
TTTTAGCCCTCTTGCTGCCTTTTGGGCCTTTTTTTTTTGTCCTGGGTCAG
TTTTATTTATCCTCTTCTTCCTGCCCTTTTTTTTTTTACTCCCCCCCCCT
TTTTCTTCTTCTGTTTTCCCTCTTTCCATTTCCCCCCTCTCCTCCCCCCT
TTCTTTCTCCTTCTTTTTTTCCCATT

Query= MSMg01no392_d04.b1 MSMg01no392_d04.b1 CHROMAT_FILE:
MSMg01no392_d04.b1 PHD_FILE: MSMg01no392_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:39 2005
         (483 letters)



>mm_chr7_103751175_103752057
          Length = 883

 Score =  893 bits (462), Expect = 0.0
 Identities = 465/466 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattaatgtctaagtctagtgaggttccaggaacctcttgcttcctcctcacagt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 gaattcattaatgtctaagtctagtgaggttccaggaacctcttgcttcctcctcacagt 587

                                                                       
Query: 65  gctaaaagtacaagcacacactgtactttttaggttggtgccagggatcagattcaattt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 gctaaaagtacaagcacacactgtactttttaggttggtgccagggatcagattcaattt 527

                                                                       
Query: 125 ttgtatttgtgaaactactctacccatgaagccctctcctccactcaggaggtagtgttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ttgtatttgtgaaactactctacccatgaagccctctcctccactcaggaggtagtgttt 467

                                                                       
Query: 185 ttatcatctactgtagagatgaaggactgctatagagcttggatttaaacctagacaact 244
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ttatcatccactgtagagatgaaggactgctatagagcttggatttaaacctagacaact 407

                                                                       
Query: 245 gcccctttgtccacagtcaaagccaaagccaaagccattgcaaacactttttgctgtgct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gcccctttgtccacagtcaaagccaaagccaaagccattgcaaacactttttgctgtgct 347

                                                                       
Query: 305 gagtgctacccacaactgttctcacacggtgctctactgcttcccgaagaaggagaaacg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gagtgctacccacaactgttctcacacggtgctctactgcttcccgaagaaggagaaacg 287

                                                                       
Query: 365 ctggaggccacttctttccattttacattatggatcagcaaagtattcggaaaagcagct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ctggaggccacttctttccattttacattatggatcagcaaagtattcggaaaagcagct 227

                                                         
Query: 425 gctgaattcacaaggagaaaaggtgtgtgtgtgtgtgtgtgtgtgt 470
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 gctgaattcacaaggagaaaaggtgtgtgtgtgtgtgtgtgtgtgt 181


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no392_d04.g1 MSMg01no392_d04.g1 CHROMAT_FILE:
MSMg01no392_d04.g1 PHD_FILE: MSMg01no392_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:39 2005
         (321 letters)



>mm_chr7_103597075_103597795
          Length = 721

 Score =  574 bits (297), Expect = e-168
 Identities = 315/321 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctaaaccttgctccatctttctggaccattggaaggtgagctcctgctaggtagactgc 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 tctaaaccttgctccatctttctggaccactggaaggtgagctcctgctaggtagactgc 260

                                                                       
Query: 61  cctgacatcttagaatcccttgttcttgcctctgtcccacagcaggagtcatcacactac 120
           ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgacatcctagaatctcttgttcttgcctctgtcccacagcaggagtcatcacactac 320

                                                                       
Query: 121 tctggccactccagcatgtgtccctattctctgggcagatacagggtatttatggatgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctggccactccagcatgtgtccctattctctgggcagatacagggtatttatggatgtc 380

                                                                       
Query: 181 tatgctggaagttcttgtgggtaaggaaatgtttgagagtaggagagcccacactggatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatgctggaagttcttgtgggtaaggaaatgtttgagagtaggagagcccacactggatg 440

                                                                       
Query: 241 tttgtggtatggctcggttttttctttctgttcttcccagggctatgaaagtcataatag 300
           ||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttgtggcatggctctgttttctctttctgttcttcccagggctatgaaagtcataatag 500

                                
Query: 301 atatttgcaaggatttaggca 321
           |||||||||||||||||||||
Sbjct: 501 atatttgcaaggatttaggca 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)