BAC Information

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BAC

Clone NameMSMg01-392I13
Chromosome7 (Build37)
Map Location 37,440,186 - 37,440,380
singlet/doubletsinglet
Overlap genenone
Upstream geneDpy19l3, zfp507, LOC100043872, EG668988, LOC668507
Downstream geneTshz3, LOC100043874, Zfp536
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392I13.T7 (MSMg01no392_i13.b1)MSMg01-392I13.TJ (MSMg01no392_i13.g1)
ACCAG494046AG494047
length682735
length of high quality
(start - end)
---197 (75 - 271)
definitionCHROMAT_FILE: MSMg01no392_i13.b1 PHD_FILE: MSMg01no392_i13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:05 2005CHROMAT_FILE: MSMg01no392_i13.g1 PHD_FILE: MSMg01no392_i13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCACACACCCAAACCCAGGAGACCCCTTCTACCCGGCGGGGNANNAATT
CCCACGCAGCGAGGGNGAGAGAGGGAAAGCACCAGCGGCCACGTGCCGCA
GAACGAACCAACCCAGAACAAGAAAGCACAAATGGGGCGGGGGGGGCGCC
GCACAACCCAACGCGGCCACAAGCCCCGCCCCAAACCACGCCCCCAGGCG
CACCCAGCCCTTTTCGAACCACCGAGGCCACCCCCCCAAACACGCCACAC
ACCCCGGAGACCGACCACTTTTTTATTTTCACCACCCCCCCCCAGCAGAA
ACCCCCCTTTTTCCTCCCCCGCCCCCCGGCGAGACACCAAAAAAAAACCA
CCGACCCCCCCCCGCCGCAAACAGCCAACCCGTCGCCCGCATCCCCCAAC
CCACACAAGACACAACCAAACCCCAAGCCCAACCCACCACCCCCACCCCC
GACCAAATCCCCCACCCGCCCAACAACATCCCGCCCCCCCCCACCACCCA
TCAAACATACACCCCCCCCCCCTCACACACCCACCCGCCCAACCCCCATC
CAAGCCCCTCATTATTTCATCATACCCCACAAACAGCCAACCAACACTAG
CCCCAACTCCCCCCCCCCCGGTTTTCACCTGCACGCGCACAGCGACCCCC
CGATCAACCCACATACCCCCCCACCGAGCCCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGAGGTTGCAGATGCATGCTACTGCC
CACAGCGTTCCAGGGTGCTGGGGATCTGAACTCAGGCTCTGACATCTTAA
CAGCCCACACTGCCCATCAAGCCATGGTCTGCACACTCCATTGCTTGCTA
CAAGGACTTGCAGAAACAAAGATGCACACTTGGTGGTAGTCAGGAAGGGG
AAAGAGGGAGGGAGGGTGGNANNNNNNNNNNNTNCNNNNNNNCNTNNNNN
TNNCNNNNCCNCNNNTCTTTTTTTTTTTCNNCCCCCCCCCNCCTTCCCCC
TCCTCCTCTCCCTTTCTCCCCCCTTCTTCCTCTTCCTCCCCCCTCCCCCC
CTTCCCCCTCCCCCCCCTCCTCTTTCTCCCCCCTCCCCCCCTCCCCCTCC
CCCCTTCCTCCTTTCCCCCCCCCCCTTCCCCCCTTCCCTTCTTTCCTTCC
TCTTCCCCTTCCCCCTCCCCTTCCCTCCTCCCTCCTTTCCCCCCCCCCCT
TCTCCCCCCCCTTCCCTCCCTCCCTCCCCCCCTTCCCCCTTTTCCCCTTC
CCCTCTCCCCCCCTTCCTCCCTCTTCCCCCCCCTCCCCCTCTCCTCCTCC
TCCTCCCCCCTCTCNTCTTCCCTTCCCCTCTCCCTCCCCCCCCTCCCTTT
CCCTCCCCTCCCCCCTTCCTTTCCTCTTTTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_i13.g1 MSMg01no392_i13.g1 CHROMAT_FILE:
MSMg01no392_i13.g1 PHD_FILE: MSMg01no392_i13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:05 2005
         (197 letters)



>mm_chr7_37439986_37440582
          Length = 597

 Score =  346 bits (179), Expect = e-100
 Identities = 191/195 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaggttgcagatgcatgctactgcccacagcgttccagggtgctggggatctgaactca 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 tgaggttgcagatgcatgctactgcccacagcgttacagggtgctggggatctgaactca 260

                                                                       
Query: 61  ggctctgacatcttaacagcccacactgcccatcaagccatggtctgcacactccattgc 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 ggctctgacatcttaacagcccacactgcccatcaagccatgctctgcacactccattgc 320

                                                                       
Query: 121 ttgctacaaggacttgcagaaacaaagatgcacacttggtggtagtcaggaaggggaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 321 ttgctacaaggacttgcagaaacaaagatgcacacttggtggtagtcaggaaggggtcag 380

                          
Query: 181 agggagggagggtgg 195
           |||||||||||||||
Sbjct: 381 agggagggagggtgg 395


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 197
Length of database: 597
Length adjustment: 8
Effective length of query: 189
Effective length of database: 589
Effective search space:   111321
Effective search space used:   111321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)