BAC Information

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BAC

Clone NameMSMg01-392P17
Chromosome7 (Build37)
Map Location 133,766,243 - 133,766,490
singlet/doubletsinglet
Overlap genenone
Upstream geneIl21r, Gtf3c1, D430042O09Rik, Gsg1l, Xpo6, Sbk1, LOC100043495, Lat, 2210013K02Rik, Nfatc2ip, Cd19, Rabep2, Atp2a1, Sh2b1, Tufm, Atxn2l, Eif3s8, Cln3, Apob48r, Il27
Downstream geneNupr1, Ccdc101, Sult1a1, LOC629029, Giyd2, Bola2, Coro1a, Snrp1c-ps1, LOC100043044, Mapk3, Gdpd3, Ypel3, Tbx6, Ppp4c, Aldoa, 1500016O10Rik, 4930451I11Rik, Doc2a, Ccdc95, Hirip3, 1110032O16Rik, Kctd13, A830007L07Rik, Sez6l2, D830044I16Rik, Cdipt, Mvp, 2900092E17Rik, Maz, Kif22, 1810010M01Rik, AI467606, Qprt, Spn, Cd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik, Sephs2, Itgal, Zfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392P17.T7 (MSMg01no392_p17.b1)MSMg01-392P17.TJ (MSMg01no392_p17.g1)
ACCAG494389AG494390
length782774
length of high quality
(start - end)		239 (80 - 318)245 (73 - 317)
definitionCHROMAT_FILE: MSMg01no392_p17.b1 PHD_FILE: MSMg01no392_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:42 2005CHROMAT_FILE: MSMg01no392_p17.g1 PHD_FILE: MSMg01no392_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCCCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCAAACAGGA
TCCGCGGAATTCTGTTTCCCACCCTGGCCTTGAACTCTCAAGATCTGCTT
TCCAAGTACTGGGATGAAAGGCATGTGCTATTCTCCTAGCTTCTATGAGA
CGATCCTTTTTATTTTATATACATTGGTATTTTAACTGAAATGTGTGTAT
GTGTGAGTGTTGGATCCTCTGGAACAGTTGTGAGCAGCCATGTGGGTGCT
GGTAATTGAACCCAGGTGGTTGGCAGGCTGGAAGAGCAGTCAGTGTTAAC
CACTGAGCCATCTCCCCATCCTTTATAAGAAAATCTTAAGGCACATAAAA
ATTGTTCAAAATTGACAGGGACAATAGAATACTGAAAAAGAGGGAGTATG
GTGTGCAGAAGATCAACACCCTGCTCTGCCTACAGCAAAAGGTAAAGAGA
AAGGAGGCAGACTGCATGCACTGCGAATTTGGGGAGCTCCAGCGGCTGGC
CTAGTGTTCGTGTTGCTTTGACCTCTCCCCCACGACAGGTGAAAGCCTCA
CCCGACAACCACTTTTTCTGGATTACTTTTTGCCTCTTGCTTCCTTGACC
CCCTCTTCTTCTTTTTTCCCCCGGGCTGCTTCCGACATTCTTTTTGCCCA
CCCCGTCTTCTCCTCTCCTATTTTTCCCCCCCCCCCGCCCCTTGTCCCCT
CCATCGTCTGCGTACCTTTCACGCCCCTCCCCTCCTTTACCCTCTTCTCC
GCTTTACCTCCTTTTTCCCTCCCCCTTCCTCT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGGTCCTGAGACCCATCGGCCCACCATG
CTTAGGGAGAGCTTTCTCACCAGCTCACCAAGCACCCCATCCTGGAAGCC
AGCCTGGTATTTCATGACTGAATTTGAGCCCTCGGTTGCTTAAAACAAAT
CCTCTGCATGTTTTAAATCATGGATGCTGGGTTTTTTTTTTTTTCCATTT
TGCAAATGGTATTAACAGAAACATTCTCTTCCAAAAGCAGCTCTATATAA
TAGGACCTCGTGGTGCTCATTATTATTTAGGGGACTGGCCACAGGTTGTC
TCTGGGACAGCACTGCAAAGAAACAAAGCAACTTCCCTGGAAGAAACCAT
AGAAACAGGCTCCTTAAAGCATCTGCATACATTAGAACAAGGCAACAATC
ACGGAGAACCGTTCAAGCCCATATGCTACCCAATAAGGACGCTCCCTTTC
CAGATCAGCCTCCTAGAGAGACCCCCAATGGACACAGCCAGACACTACCC
CCCCAACCAAAAACAAGGCCCACAACCCACGCCAAAACTGTTCCCTGCTG
GACAATTTATTGTTGGCTGCACCCCCAGGGCATCCGCATTTATTTCCTCC
CCCCGCTTCTTTTTGGGGCTGGTCTTTCTAAAACCTGCCCCGGCGAACAC
CCGTGGTTCTTGGTCCCCACCTGCCCCTTTTTTCCCGGCCCCCCGCAACC
CGTCCCTTCCCCTCTCCTCCCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_p17.g1 MSMg01no392_p17.g1 CHROMAT_FILE:
MSMg01no392_p17.g1 PHD_FILE: MSMg01no392_p17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:42 2005
         (245 letters)



>mm_chr7_133766043_133766690
          Length = 648

 Score =  449 bits (232), Expect = e-131
 Identities = 243/248 (97%), Gaps = 3/248 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggtcctgagacccatcggcccaccatgcttagggagagctttctcaccagctcaccaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggtcctgagacccatcggcccaccatgcttagggagagctttctcaccagctcaccaag 260

                                                                       
Query: 61  caccccatcctggaagccagcctggtatttcatgactgaatttgagccctcggttgctta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caccccatcctggaagccagcctggtatttcatgactgaatttgagccctcggttgctta 320

                                                                       
Query: 121 aaacaaatcctctgcatgttttaaatcatggatgctggg---tttttttttttttccatt 177
           |||||||||||||||||||||||||||||||||||||||   ||||||||||||| ||||
Sbjct: 321 aaacaaatcctctgcatgttttaaatcatggatgctggggttttttttttttttttcatt 380

                                                                       
Query: 178 ttgcaaatggtattaacagaaacattctcttccaaaagcagctctatataataggacctc 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgcaaatggtattaacagaaacattctcttccaaaagcagctctatataataggacctc 440

                   
Query: 238 gtggtgct 245
            |||||||
Sbjct: 441 atggtgct 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 648
Length adjustment: 9
Effective length of query: 236
Effective length of database: 639
Effective search space:   150804
Effective search space used:   150804
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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