BAC Information

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BAC

Clone NameMSMg01-393P04
Chromosome7 (Build37)
Map Location 4,908,361 - 4,908,850
singlet/doubletsinglet
Overlap geneGm1079
Upstream geneLOC100041186, LOC664841, Lair1, Ttyh1, Leng8, Leng9, Cdc42ep5, LOC384521, EG232801, Ncr1, Gp6, LOC100041851, Atp6v0c-ps1, Rdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049
Downstream geneGm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150, Nlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393P04.T7 (MSMg01no393_p04.b1)MSMg01-393P04.TJ (MSMg01no393_p04.g1)
ACCAG495121AG495122
length753774
length of high quality
(start - end)
490 (61 - 550)575 (62 - 636)
definitionCHROMAT_FILE: MSMg01no393_p04.b1 PHD_FILE: MSMg01no393_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:08 2005CHROMAT_FILE: MSMg01no393_p04.g1 PHD_FILE: MSMg01no393_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCCGCTAAACGACTCACTATTTCCAGAGAATCCGCGGAATTCCATGGCT
GTTCCCCCAAGGTGGAAGGAGAGGACTGACTGCTAAAAGTCCTCTGATTT
ACACACAGCACTTTACACACACACCCCATATACACACATATATGTGCATA
CACAGGTATGTGTATATACACGCATATGTGCGTGTACACACACATACACA
CAAATGCATGCACACATACACACATACAAACACATACATGCATGCACACA
AGCACACGTGCACACATTCGTGAATACACACAGCATAAAGGAGGGGCACA
GATAACACACAGGACTTATGAGAGATAGATAGAGCGAAAACCAAGAAGAG
GCCACAGCCAGGCAGCTCAGGCTAAGCAGGTCTCAGCATGCAGGTTGCTC
CCCCTTTGCAGCCTCCTGCCCTCCTCTCCACCCATCTTCTCTCAGCTCCT
TTGCCAATTCCTCAGCCTCCCCTTCCCTCTGCTTCCAGGGTTGGCCTAGA
TAGCTCTTGATGGAGCCCACAGGGTTCCTCTTCCGGGGGTGAGGATCTAG
CAGCCCCCATAGGAGAGTGTCTGCTGCAGGTGACAGGCTATACCATGGCT
CGTGGCGGTCCTGGGGCTGACCAGAAGCCTGTCAGATGACAAAGTCCTCA
AAGAAAGGGTCAACCTCGACCAAGGGCTGCGTCCATTGTGAATTAGCCAT
TAAGGAGGTAAAAGATTAGGATCCTCGGGGCCCTTCTATCCAAGTAAAGG
TTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTCACCTGAGGAATACCAAATGGCTGAGAAGCACCTGAAA
AAATGTTCAGCATCCTTAATCATCAGAGAAATGCAAATCAGAACAACCCT
GAGATTCCAACTCACACCAGTCAGAATGGCTAAGATCAAAAATGCAGGTA
ACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGGACACTCCTCCATTGT
TGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTT
CCTCAGAAAATTGGACATAGTACTACCAGAGGATCCCGCAATACCTCTCC
TGGGCATATATCCAGAAGAAGTTCCAACTGGTAAGAAGGACACATGCTCC
ACCACGCCCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACC
CAGATGCCCCTCAAAAGAGGAATGGATACAGAAAATGTGGTACATTTACA
CAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTA
GCCAAATGGATGAACCTGGAGGGCATCATCCTGAGTGAGGTAACCCAATC
ACAAAAGAACTCACATGATATGTACTCACTGATAAGTGGATATTAGCCCA
GAAACTTAGAATACCCAAATTACAAGATACAATTTGTGAAACACATTGAA
CTTCAGAAGAATGAAGACCAAAGTGTGGAAACCTTTGCCCCTTCCTTAAA
TTGGGAAAAAAACACTCTCGGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_p04.b1 MSMg01no393_p04.b1 CHROMAT_FILE:
MSMg01no393_p04.b1 PHD_FILE: MSMg01no393_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:08 2005
         (490 letters)



>mm_chr7_4908161_4909050
          Length = 890

 Score =  917 bits (474), Expect = 0.0
 Identities = 486/490 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtggaaggagaggactgactgctaaaagtcctctgatttacacacagcactttacacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggtggaaggagaggactgactgctaaaagtcctctgatttacacacagcactttacacac 260

                                                                       
Query: 61  acaccccatatacacacatatatgtgcatacacaggtatgtgtatatacacgcatatgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaccccatatacacacatatatgtgcatacacaggtatgtgtatatacacgcatatgtg 320

                                                                       
Query: 121 cgtgtacacacacatacacacaaatgcatgcacacatacacacatacaaacacatacatg 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catgtacacacacatacacacaaatgcatgcacacatacacacatacaaacacatacatg 380

                                                                       
Query: 181 catgcacacaagcacacgtgcacacattcgtgaatacacacagcataaaggaggggcaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catgcacacaagcacacgtgcacacattcgtgaatacacacagcataaaggaggggcaca 440

                                                                       
Query: 241 gataacacacaggacttatgagagatagatagagcgaaaaccaagaagaggccacagcca 300
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gataacacacaggacagatgagagatagatagagcgaaaaccaagaagaggccacagcca 500

                                                                       
Query: 301 ggcagctcaggctaagcaggtctcagcatgcaggttgctccccctttgcagcctcctgcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggcagctcaggctaagcaggtctcagcatgcaggttgctccccctttgcagcctcctgcc 560

                                                                       
Query: 361 ctcctctccacccatcttctctcagctcctttgccaattcctcagcctccccttccctct 420
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 561 ctcctctccacccatcttctctcagctccgttgccaattcctcagcctccccttccctct 620

                                                                       
Query: 421 gcttccagggttggcctagatagctcttgatggagcccacagggttcctcttccgggggt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcttccagggttggcctagatagctcttgatggagcccacagggttcctcttccgggggt 680

                     
Query: 481 gaggatctag 490
           ||||||||||
Sbjct: 681 gaggatctag 690


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)