Query= MSMg01no393_p20.b1 MSMg01no393_p20.b1 CHROMAT_FILE:
MSMg01no393_p20.b1 PHD_FILE: MSMg01no393_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:12 2005
(560 letters)
>mm_chr7_95074551_95075509
Length = 959
Score = 1060 bits (548), Expect = 0.0
Identities = 554/556 (99%), Gaps = 1/556 (0%)
Strand = Plus / Plus
Query: 5 gaattccggcaagtagcccagctacacaggagacagtttcatgccaagagcgtgtggatt 64
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 205 gaattccggcaagtagcccagctacacaggagacagtttcatgccaagagcatgtggatt 264
Query: 65 attgttctcaccattcaggtttagaccaagtgttcccctatccatggtgtcaccttggtt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attgttctcaccattcaggtttagaccaagtgttcccctatccatggtgtcaccttggtt 324
Query: 125 acttaattcctggcaagagagttcagattgaacttcccagaagccccttcctcattatgc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acttaattcctggcaagagagttcagattgaacttcccagaagccccttcctcattatgc 384
Query: 185 ttctgcatttcattcttttttttttcctgtgacagacactaactcagagaaatctatcag 244
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 385 ttctgcatttcattcttttttttt-cctgtgacagacactaactcagagaaatctatcag 443
Query: 245 tattgcaaatctagtcaaatcctgttttaaaggcttgctacttatcaataaattctagtc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tattgcaaatctagtcaaatcctgttttaaaggcttgctacttatcaataaattctagtc 503
Query: 305 tgttttcctgggtatatatgaccagacatttaacctttcacttccattggctatcccttt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgttttcctgggtatatatgaccagacatttaacctttcacttccattggctatcccttt 563
Query: 365 ctttcccccgccccccttcatacggatgcacaaaattatggcttcatcttcaacttatca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctttcccccgccccccttcatacggatgcacaaaattatggcttcatcttcaacttatca 623
Query: 425 cgcttatgaatatgttctccacaagtgactcacttctctgccacttcctcccttccctgt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cgcttatgaatatgttctccacaagtgactcacttctctgccacttcctcccttccctgt 683
Query: 485 ccactcagtggatgctctaggtctctaaacacattttacctttgaaatttttctccagtg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ccactcagtggatgctctaggtctctaaacacattttacctttgaaatttttctccagtg 743
Query: 545 attttactcttttgtt 560
||||||||||||||||
Sbjct: 744 attttactcttttgtt 759
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 959
Length adjustment: 10
Effective length of query: 550
Effective length of database: 949
Effective search space: 521950
Effective search space used: 521950
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no393_p20.g1 MSMg01no393_p20.g1 CHROMAT_FILE:
MSMg01no393_p20.g1 PHD_FILE: MSMg01no393_p20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:12 2005
(414 letters)
>mm_chr7_95242562_95243372
Length = 811
Score = 748 bits (387), Expect = 0.0
Identities = 401/407 (98%), Gaps = 3/407 (0%)
Strand = Plus / Minus
Query: 1 tttaaatacagagtcttgccacactgtataagcatgtcttgaacttttaagatccataaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tttaaatacagagtcttgccacactgtataagcatgtcttgaacttttaagatccataaa 345
Query: 61 tcctcttactgtattcttctgtgtaaccgacactagtacatatggttttattgtgcctaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tcctcttactgtattcttctgtgtaaccgacactagtacatatggttttattgtgcctaa 285
Query: 121 caagtaaaaggaaaaaaattgaacatactaacaatacaacaaaatcttatgaattctaca 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 284 caagtaaaaggaaaaaaattgcacatactaacaatacaacaaaatcttatgaattctaca 225
Query: 181 tgaagagatttagaaggtcttatgcagatataatttgtaaaataattttaatatttggat 240
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 224 tgaagagattt---aggtcttatgcagatataatttgcaaaataattttaatatttggat 168
Query: 241 taggaattgggggtaagagtatgttttctatatttaaaaataaagatgaacagtaggcat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 taggaattgggggtaagagtatgttttctatatttaaaaataaagatgaacagtaggcat 108
Query: 301 tggtagaggcagagaagataacctgtgcagaagtacagtatagaaagcaaagagatatct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 tggtagaggcagagaagataacctgtgcagaagtacagtatagaaagcaaagagatatct 48
Query: 361 atggctgggaatatctctgtaactatgatgatttggtcctgtcagat 407
|||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 47 atggctgggaatatctctgtaactatgacgatttggtcctgtcagat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 811
Length adjustment: 9
Effective length of query: 405
Effective length of database: 802
Effective search space: 324810
Effective search space used: 324810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
