Query= MSMg01no394_i19.b1 MSMg01no394_i19.b1 CHROMAT_FILE:
MSMg01no394_i19.b1 PHD_FILE: MSMg01no394_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:58 2005
(536 letters)
>mm_chr7_141445703_141446638
Length = 936
Score = 855 bits (442), Expect = 0.0
Identities = 508/534 (95%), Gaps = 12/534 (2%)
Strand = Plus / Plus
Query: 9 tcaacccctt-ttcggagctgtccctcctgggacaatgcaccttgcctatgagtagagtt 67
|||||||||| || |||||||||||||||||||||||||||| ||||||||||| ||| |
Sbjct: 209 tcaaccccttgtt-ggagctgtccctcctgggacaatgcaccctgcctatgagtggagat 267
Query: 68 gtattttctccagagcctagagtttgtgacagatcaaaactgaataagcctcttctctga 127
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gtattctctccagagcctagagtttgtgacagatcaaaactgaataagcctcttctctga 327
Query: 128 acagatttcaagatttaaactatagtgtacccttcaagtatcggcaacttcttcaattcc 187
||||||| |||||||||| |||||||||||||||||| ||| | ||||||||||||||||
Sbjct: 328 acagattccaagatttaagctatagtgtacccttcaaatattgacaacttcttcaattcc 387
Query: 188 tgcaactgataatataatatttgtgggcagttggtctaacaggaaactggtaagcacagg 247
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tgcaactgataatataatgtttgtgggcagttggtctaacaggaaactggtaagcacagg 447
Query: 248 ctcaactatcaagcagattgtcttatgtgctctttta----tgaacattggccacaaggg 303
||| |||||||||||||| ||||||||||||| | |||||||||||||||||||
Sbjct: 448 ctcgactatcaagcagatcgtcttatgtgctc----aggcatgaacattggccacaaggg 503
Query: 304 catcctttgtggtggaccatattatattatagccccttagcttgagatctcacattg-aa 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 504 catcctttgtggtggaccatattatattatagccccttagcttgagatctcacattggaa 563
Query: 363 aagggagtcaaagggaggggtattctaagaacatgcaccacaccatctctctgtgttttc 422
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 564 aagg-agtcaaagggaggggtattctaagaacatgcaccacaccatgtctctgtgttttc 622
Query: 423 tcagctttcaaaaaacaatcattgatcgaaacctggctttctggacagaatcactcactc 482
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 623 tcagctttcaaaaaacaatcattgattgaaacctggctttctggacagaatcactcactc 682
Query: 483 ctgactgtgtggttataaactttcctgttcattacaaatcaacatctgtagcat 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ctgactgtgtggttataaactttcctgttcattacaaatcaacatctgtagcat 736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space: 487076
Effective search space used: 487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no394_i19.g1 MSMg01no394_i19.g1 CHROMAT_FILE:
MSMg01no394_i19.g1 PHD_FILE: MSMg01no394_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:58 2005
(508 letters)
>mm_chr7_141590272_141591179
Length = 908
Score = 967 bits (500), Expect = 0.0
Identities = 506/508 (99%)
Strand = Plus / Minus
Query: 1 aggtcctcaggagtcacagcaagcacagcgccatctcaccagccccctcccatatttctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 aggtcctcaggagtcacagcaagcacagcgccatctcaccagccccctcccatatttctg 649
Query: 61 cctcaacactaggaggactggaaaggatgcctgtgtgcccgctgactcttctccccctag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 cctcaacactaggaggactggaaaggatgcctgtgtgcccgctgactcttctccccctag 589
Query: 121 catctgccttatatagacaatttggaaactggagggggtggggacagaaagaggtgtcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 catctgccttatatagacaatttggaaactggagggggtggggacagaaagaggtgtcct 529
Query: 181 gagtagtgagaagggcctgtctgcggttccaagtgttagcctggatgaatctcaaaacac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gagtagtgagaagggcctgtctgcggttccaagtgttagcctggatgaatctcaaaacac 469
Query: 241 tgagcatcaaaagcgaagccttacagaatgtgatagatgggtaatcttaacaacaggcta 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tgagcatcaaaagtgaagccttacagaatgtgatagatgggtaatcttaacaacaggcta 409
Query: 301 agcaatgcctggtattgctaagagctgcacacttgtacaatagggccatgggaagcataa 360
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 408 agcaatgcctggtattgctaagagctgcacacttatacaatagggccatgggaagcataa 349
Query: 361 acttgagttctgatgaggtttgctcaggggaagatataactcaggaaaggatcagaaatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 acttgagttctgatgaggtttgctcaggggaagatataactcaggaaaggatcagaaatt 289
Query: 421 catattttggtaacatcaggctgggtggggtgcctgtacacttctctgtgcacattcctc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 catattttggtaacatcaggctgggtggggtgcctgtacacttctctgtgcacattcctc 229
Query: 481 ccatatgtcttaaatatcacatgatttc 508
||||||||||||||||||||||||||||
Sbjct: 228 ccatatgtcttaaatatcacatgatttc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space: 447204
Effective search space used: 447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
