Query= MSMg01no394_l01.b1 MSMg01no394_l01.b1 CHROMAT_FILE:
MSMg01no394_l01.b1 PHD_FILE: MSMg01no394_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:40:09 2005
(209 letters)
>mm_chr7_78608814_78609422
Length = 609
Score = 348 bits (180), Expect = e-100
Identities = 195/200 (97%)
Strand = Plus / Minus
Query: 8 gaattcagagcttctccacgcaagtgaaaaccagaagtgtttacacacattcctagcatt 67
|||||||||||| || || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gaattcagagctcctgaacccaagtgaaaaccagaagtgtttacacacattcctagcatt 348
Query: 68 cctctggtgagataggagagagaaggagaaagggcaatccttcagatgatttagatcagg 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 cctctggtgagataggagagagaaggagaaagggcaatccttcagatgatttagatcagg 288
Query: 128 taaaatgatgaacacagcagtgaataaaagaccctgtataattgcagcactcaggaggta 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 taaaatgatgaacacagcagtgaataaaagaccctgtataattgcagcactcaggaggta 228
Query: 188 gaggtaggtagagctctgag 207
|||||||||||| |||||||
Sbjct: 227 gaggtaggtagatctctgag 208
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 609
Length adjustment: 9
Effective length of query: 200
Effective length of database: 600
Effective search space: 120000
Effective search space used: 120000
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no394_l01.g1 MSMg01no394_l01.g1 CHROMAT_FILE:
MSMg01no394_l01.g1 PHD_FILE: MSMg01no394_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:40:10 2005
(498 letters)
>mm_chr7_78442237_78443131
Length = 895
Score = 924 bits (478), Expect = 0.0
Identities = 492/498 (98%), Gaps = 3/498 (0%)
Strand = Plus / Plus
Query: 1 tgtgtaatatatctccatcctctgtgtctaagtgacgaggctgagtttctgagatggacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgtaatatatctccatcctctgtgtctaagtgacgaggctgagtttctgagatggacc 260
Query: 61 gtcaaggatctttataacggcagttcctaaccaaaaagcaaacatcacatgaatacacat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcaaggatctttataacggcagttcctaaccaaaaagcaaacatcacatgaatacacat 320
Query: 121 ttgtacaggagaggactggggaccaaactatcctagggtagaagctttaagaataaaaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtacaggagaggactggggaccaaactatcctagggtagaagctttaagaataaaaag 380
Query: 181 tattatttttttaactaccttgatacagtataacaaggtttagcaattatagtttatatt 240
|||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 381 tatt---tttttaactaccttgatacagtataacaagggttagtaattatagtttatatt 437
Query: 241 gaattgccacgtgcatgaagttcaagaagaaagagagaggagcccacacccaagttaatc 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gaattgccacgtacatgaagttcaagaagaaagagagaggagcccacacccaagttaatc 497
Query: 301 taagttagaaatcctcaacctgtaggtcttgaccctcttgggtcagagaggtcaaatacc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 taagttagaaatcctcaacctgtaggtcttgaccctcttgggtcagagaggtcaaatacc 557
Query: 361 atatatccttcatatgagatattttatattacaatttataacagtagaaaaattatggta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 atatatccttcatatgagatattttatattacaatttataacagtagaaaaattatggta 617
Query: 421 ataaaatagcaatggaacaattttatggtagtaatcaccaaaacacgagggaagggtcac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ataaaatagcaatggaacaattttatggtagtaatcaccaaaacacgagggaagggtcac 677
Query: 481 agtgttagaaaagttgag 498
||||||||||||||||||
Sbjct: 678 agtgttagaaaagttgag 695
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 895
Length adjustment: 10
Effective length of query: 488
Effective length of database: 885
Effective search space: 431880
Effective search space used: 431880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
