BAC Information

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BAC

Clone NameMSMg01-394M24
Chromosome7 (Build37)
Map Location 63,893,697 - 63,894,083
singlet/doubletsinglet
Overlap genenone
Upstream geneSiglech, Tubgcp5, Cyfip1, Nipa2, Nipa1, LOC672959, Herc2, p
Downstream geneLOC100040839, Gabrg3, Gabra5, Gabrb3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394M24.T7 (MSMg01no394_m24.b1)MSMg01-394M24.TJ (MSMg01no394_m24.g1)
ACCAG495780AG495781
length806790
length of high quality
(start - end)		402 (76 - 477)387 (80 - 466)
definitionCHROMAT_FILE: MSMg01no394_m24.b1 PHD_FILE: MSMg01no394_m24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:40:20 2005CHROMAT_FILE: MSMg01no394_m24.g1 PHD_FILE: MSMg01no394_m24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:40:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAAACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCACAGGATCC
GCGGAATTCCTAAAATTTTCCTGTAATTAGTAAGCCTTTGAAAATAGGAC
TGCTATTAAAGCCCTCACTGAAATGAAAACTGCAATTAAAACTCTGTCAG
TCTTCATGTGTTATGAGTTAATTGCTTCTGAGATAGAAAGTAGGCATTTG
GGCTAAAATCCACTTATCAGTGAGTGCATGCTATGAGTGTTCTTTTGTGA
GTGGGTTTTCTCACTCAGGATATTTTCTAACTCCATCCATTTGCCTAAGA
ATTTTATGAATCCGTTGTTCTTAATAGCTGAGTAGTACTCCATTGTGTAA
ATGCATCACATTTTCTCTATCCATTCCTCTGAAGAAGGACATCTGGGTTC
TTTCCAGCTTCTCGCTATTATAAATAAGGCTGCTATGAACATAGTATATA
TATGAACATCTTTTGGGTATATGCCCAGGAGACGTATTGCTGGGTCCTCA
AGTAATACTATGTTCCATTTTCTGAAAAACTGCCAGACTGATTTCCCGAG
TGGGTGGACCAGCTTGCAACCCCCCCAACAATGAAGGAGGGTTCTCCTTT
TTCCCACCCTTGGCCAGATTCGGTGGTTTACTTAATTTTTTAATCTAACA
CTCTCTTAACTTGGGTCCGGCGGAACCCCTCGGCTTGCCTTATAAACAAC
CACCCTCGCCCCCCAACGACCCCTGCCATTTTCTCCCTTTTCCGCCGCCC
CCCTTTTCTCCTTCCCCATCAAAAACCCCCCTGTTTCTCTCATAACCAAT
ATTCAN

NNNNCCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACCAGAAGCATTTTGGAAGT
AGGGATCATGATGTCTCATCCTTTCCTTGGACAATCAAAATGGGCAATAT
TAGCCATAATGTTTTTTATAGGGTTTGCCATGATGACGCCCCATGACTGG
ACTCTGACACAAAGAATTTTATTAGCTCTGCTATATCTGGAAATAACAGG
TTTATAAAAATATTGTCTGATTTCTTTAATGAGTTAGTTATGTGCCAAGT
GACAGTTGGTCCTTGTAGATGATACAAATATCTTCTTGTGAATGAATAGA
GCCTTACAACTTTGTAAAAGGCCTAAATCTACTAACTCCTGTGGAAGGGT
GTAAAAGTATCTTTTACTTGCCTGTTATAATTATCAATCTTGGAGGCTTA
CTGCCTCCTTCTGCTAACCTAGGCCTGGTCCTGGAAGCTTCTAGCCTCTG
AACATTCTAATCTAGGCCTAGAAAGTTTTTGGCCTCTGAAACTTGCTGCT
GAAAAAGTTTGCCCCCTCCCTGGTTCTTCCGATCCCAAAATTTCTGATTC
ACTCCCGGTGTTCTGGTTCAAAACCCTTTTTCAACTTTGATTGAGTCCAA
AAACCTCCCCTTGGTTTTCGAAGGGGGCTGTTTCCTCCCCAAATAATTTT
GGAAAAAAGGGTAAAAGTTCGGGGCCCTCCATCTCTCTCGGGCATTTTTC
TCTTAACCGGCGAAAGTGTTGCCCTCCTCCCCAAAAACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_m24.g1 MSMg01no394_m24.g1 CHROMAT_FILE:
MSMg01no394_m24.g1 PHD_FILE: MSMg01no394_m24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:40:20 2005
         (387 letters)



>mm_chr7_63893497_63894283
          Length = 787

 Score =  748 bits (387), Expect = 0.0
 Identities = 387/387 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaccagaagcattttggaagtagggatcatgatgtctcatcctttccttggacaatcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaccagaagcattttggaagtagggatcatgatgtctcatcctttccttggacaatcaaa 260

                                                                       
Query: 61  atgggcaatattagccataatgttttttatagggtttgccatgatgacgccccatgactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgggcaatattagccataatgttttttatagggtttgccatgatgacgccccatgactg 320

                                                                       
Query: 121 gactctgacacaaagaattttattagctctgctatatctggaaataacaggtttataaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gactctgacacaaagaattttattagctctgctatatctggaaataacaggtttataaaa 380

                                                                       
Query: 181 atattgtctgatttctttaatgagttagttatgtgccaagtgacagttggtccttgtaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atattgtctgatttctttaatgagttagttatgtgccaagtgacagttggtccttgtaga 440

                                                                       
Query: 241 tgatacaaatatcttcttgtgaatgaatagagccttacaactttgtaaaaggcctaaatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgatacaaatatcttcttgtgaatgaatagagccttacaactttgtaaaaggcctaaatc 500

                                                                       
Query: 301 tactaactcctgtggaagggtgtaaaagtatcttttacttgcctgttataattatcaatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tactaactcctgtggaagggtgtaaaagtatcttttacttgcctgttataattatcaatc 560

                                      
Query: 361 ttggaggcttactgcctccttctgcta 387
           |||||||||||||||||||||||||||
Sbjct: 561 ttggaggcttactgcctccttctgcta 587


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space:   294084
Effective search space used:   294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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