BAC Information

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BAC

Clone NameMSMg01-395K18
Chromosome7 (Build37)
Map Location 93,130,799 - 93,131,167
singlet/doubletsinglet
Overlap genenone
Upstream geneF830104D24Rik, LOC620641, EG620672, Vmn2r-ps68, EG620697, Vmn2r-ps69, LOC330581, LOC100039339, Vmn2r70, Vmn2r-ps72, EG233445, Vmn2r-ps74, EG244114, EG620928, EG546980
Downstream geneLOC666382, LOC637652, LOC637667, EG666418, LOC100039471, EG546981, Vmn2r-ps86, Vmn2r76, Olfr310, Olfr309, Olfr308, Olfr307, Olfr306-ps1, Olfr305, Olfr304, Olfr303, Olfr301, Olfr1531-ps1, Olfr300-ps1, Olfr299, Olfr298, Olfr297, Olfr296-ps1, Olfr295, Olfr294, Olfr293, Olfr292, Folh1, EG546983, Vmn2r-ps87, LOC637896
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395K18.T7 (MSMg01no395_k18.b1)MSMg01-395K18.TJ (MSMg01no395_k18.g1)
ACCAG496433AG496434
length775795
length of high quality
(start - end)
421 (69 - 489)387 (74 - 460)
definitionCHROMAT_FILE: MSMg01no395_k18.b1 PHD_FILE: MSMg01no395_k18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:35 2005CHROMAT_FILE: MSMg01no395_k18.g1 PHD_FILE: MSMg01no395_k18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTAGCTTTGCAATCTCAAATGGCTGGGAAGCACCTAAAGAAATGTCCA
AACCCTTTTGTGATTAGGGAAATGCAAATCAAAACGACCCTGAGAATCTG
CCTTACACCATTCAGAATGGCTAAGATCCAAACATTAGGCGATGAGACAT
CTTAGTGAGGATGTGGAGAAAGAGGAAAACTCCTCTACTGCTGGTGGGGT
TGCAAACTTGTACAACCACTCTGGAAGTCAATAAGAAGGTTCTTCGGAAA
ACTGGAAATAGATCCACTCAAAGATCCAGCGATACCACTCTTGGGAATAT
AACCAATTGATATACTACAATACAACAGAAGCACGTGTTCAACTATGTTC
ATAGCAGCTTTATTTGTGATATCCAGAAGCAGGAAACAACCCATAGGTCC
CAAGACAGAAGCATGGATACAGAACATTTTTTCATTTACACAATGGAATA
CTACTGACTTATTAAGTATGAGGACCTCCTGAGTATTTCAGGAAAATGGT
GGAACTAGAAAACGTCATCTTGAATAAAGTACTTCTGATCCCAACAATTT
GAATGGTTAGGAATCCCACATAATCTTGTCTTACCCTAATCTCCCCCATA
AAATTGTTTTTAATTTTCTTAAATCTTCTCCCCACCTTTTATGCCTCCAA
CCCTTATTTCCCCTTTGCACTTTGTTTTCCCCCCTTCCCCATTCTCTATC
TCTTTCACTTTTTTTCTTCTTTTTG
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTTGCTTTTTTTTTTTTTTTTTTTTT
CTGGTTGCTATATATTTCATTGGCCTTACTGTCATACTTAAAAAAAAAAT
AAAATAAAAAAAATAAAAACCTTAATGTTTTTCTATGTACTTCTTTTATA
GATTTATTTTTCCACTATTTGTTGATATATAATAATATTCTTACCTAATT
CTTTCTATTCTCACATTTATCATCCACAGAACATTGTGTACTTTACTTTT
TACCTCTATGATGTCTACTTTTTGCTGGAAAGAGTGTTTAGGATAAGTGC
TCATCTTATTCAATGAAAGATAGTCATGTTATTATGGTGTGGAATTTACT
AAATTAAAAAAAACCTGTGTTTCTTTTCTTAAGGACAGATTTTCTTTTTC
TAAAATTTCCATTAATTAATACCAATGATGGAATTGTGAATGCTGCTATC
AGCTTCACGTTTGAATGTGATCCTTCCTTACATTTGCCAAGGTTTTGCGC
TTTCCGATATAATTTTTTGGCACTCCATATCTGCCCTTGTTGTCCCTAAC
CCTATTACCTTTCTCCCTACTCCCCCATATCTTTTAACTTAATTACATCC
ACTTTTTTTATATATACACTATATTCCCAGAAATCGTATTTTAACTATAA
CCATATTATTCTTAATCTTCCCTTTTTTTATTTTCTCTAATTTTTCCCCT
TCACTCCTACACTATACTATAACACTTCTCTTTAACATATACAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_k18.g1 MSMg01no395_k18.g1 CHROMAT_FILE:
MSMg01no395_k18.g1 PHD_FILE: MSMg01no395_k18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:35 2005
         (387 letters)



>mm_chr7_93130579_93131367
          Length = 789

 Score =  592 bits (306), Expect = e-173
 Identities = 356/374 (95%), Gaps = 8/374 (2%)
 Strand = Plus / Plus

                                                                       
Query: 17  tttttttttttctggttgctatatatttcattggccttactgtcatacttaaaaaaaaaa 76
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 221 tttttttttttctggttgctatatatttcattggccttactgtcatacttaaaaaaaaa- 279

                                                                       
Query: 77  taaaataaaaaaaataaaaaccttaatgtttttctatgtacttcttttatagatttattt 136
            |||| |||||||| ||||||||||||||||||||||||| |||||| |||| |||||||
Sbjct: 280 -aaaa-aaaaaaaa-aaaaaccttaatgtttttctatgtagttctttaatagttttattt 336

                                                                       
Query: 137 ttccactatttgttgatatataataatattcttacctaattctttctattctcacattta 196
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 337 ttccactatttgttgatatataataatattcttacctaattctttctattcttacattta 396

                                                                       
Query: 197 tcatccacagaacattgtgtactttactttttacctctatga-tgtctactttttgctgg 255
           |||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 397 tcatgcacagaacattgtgtactttactttttacctctat-actgtctactttttgctgg 455

                                                                       
Query: 256 aaagagtgtttaggataagtgctcatcttattcaatgaaagatagtcatgttattatggt 315
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 456 aaagagtgtttaggataagtgctcatcttattcaatgaaagatagtcatgttattacggt 515

                                                                       
Query: 316 gtggaatttactaaat--taaaaaaaacctgtgtttcttttcttaaggacagattttctt 373
           ||||||||||||||||  ||||||||| |||| ||||||||| || ||||||||||||||
Sbjct: 516 gtggaatttactaaataataaaaaaaatctgtatttcttttcctagggacagattttctt 575

                         
Query: 374 tttctaaaatttcc 387
           ||||||||||||||
Sbjct: 576 tttctaaaatttcc 589


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 789
Length adjustment: 9
Effective length of query: 378
Effective length of database: 780
Effective search space:   294840
Effective search space used:   294840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)