Query= MSMg01no395_k20.b1 MSMg01no395_k20.b1 CHROMAT_FILE:
MSMg01no395_k20.b1 PHD_FILE: MSMg01no395_k20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:35 2005
(483 letters)
>mm_chr7_142554182_142555064
Length = 883
Score = 868 bits (449), Expect = 0.0
Identities = 473/481 (98%)
Strand = Plus / Minus
Query: 3 gaattcaaagctttttccagcttatgacagattcaatagtcctcatacatttttacactg 62
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gaattcaaagctttttagagcttatgacagattcaatagtcctcatacatttttacactg 624
Query: 63 atttaaacctttattgggctctaacaccagtatttcagatacaacattcagacagggaga 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 atttaaacctttattgggctctaacaccagtatttcagatacaacattcagacagggaga 564
Query: 123 gttatttgatattactcttcttttatgccattctgggagctgtgcactagaagttaacac 182
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 563 gttatttgatattactcttcttttatgccattctgggagctgtgcactagaagttaacgc 504
Query: 183 ccaacttctggattcatagcttactggtaggaatatatttcagacagatatttgatgcct 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ccaacttctggattcatagcttactggtaggaatatatttcagacagatatttgatgcct 444
Query: 243 accataggcattgattgattggaatacacttgctgttttttgggaaatggcaatgaggat 302
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 443 accataggcattgattgattggaatacacttgctgaattttgggaaatggcaatgaggat 384
Query: 303 caggaatgttagctacactccgatgctttataatcatctgatgtctaagtttgtacgcag 362
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cagaaatgttagctacactccgatgctttataatcatctgatgtctaagtttgtacgcag 324
Query: 363 gtaagctgtgttttcttttctggtctaagagtgaagctgatccgggtcagaaacacaagt 422
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gtaagttgtgttttcttttctggtctaagagtgaagctgatccgggtcagaaacacaagt 264
Query: 423 caccctcggtacgcatgccacccacgtcaccagacctgtagctgcagtttgatatgcagt 482
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 caccctcggcacgcatgccacccacgtcaccagacctgtagctgcagtttgatatgcagt 204
Query: 483 c 483
|
Sbjct: 203 c 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space: 412929
Effective search space used: 412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no395_k20.g1 MSMg01no395_k20.g1 CHROMAT_FILE:
MSMg01no395_k20.g1 PHD_FILE: MSMg01no395_k20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:35 2005
(535 letters)
>mm_chr7_142374052_142374988
Length = 937
Score = 973 bits (503), Expect = 0.0
Identities = 528/537 (98%), Gaps = 2/537 (0%)
Strand = Plus / Plus
Query: 1 aaaagaataaacatttaaaaaggactcaaagccaacaggcttccagaaacctcatgaatt 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaagaataaacattttaaaaggactcaaagccaacaggcttccagaaacctcatgaatt 260
Query: 61 taggagaagacaaggaacagactttttgaaatccccatgacacaacagaga--ctctgca 118
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 taggagaagacaaggaacagactttttgaaatccccatgacacaacagagactctctgca 320
Query: 119 gaaactagactgatattccatctgtttcccggacaatacttttccatctgtgaatggcta 178
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 gaaactagattgatattccatctgtttcccggacaatacttttccatctctgaatggcta 380
Query: 179 acttgtatctccacctgtccttcaaccctgccataggcttcctatttcttccaggtctca 238
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 acttgtatctccacctgtccttcaaccctgccataggcttcctatttctttcaggtctca 440
Query: 239 gctcagttctcaggctccaggctgcacagatgaaagcccatagaataagtccatggagaa 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 gctcagttctcaggctccaggctgcacagatgaaagcccatagaataagtccatgaagaa 500
Query: 299 cccagagagccaagcagttaccacagtggtgcccatacagggagggagctatatatcaag 358
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 501 cccagagagccaagcagttaccacagtggtgcccgtacagggagggagctatatatcaag 560
Query: 359 gcataagaaagaaagaaggggcttggtgtctgtcacttcccctgctttcctaatacctct 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcataagaaagaaagaaggggcttggtgtctgtcacttcccctgctttcctaatacctct 620
Query: 419 ccatcagccagaagtccccttcttcccctctacttggtggcaacacacttgagaccttcc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccatcagccagaagtccccttcttcccctctacttggtggcaacacacttgagaccttcc 680
Query: 479 acaaattctcctacttctcctggagaagtggtatcacctcccactgtcatctgattg 535
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 681 acaaattctcctacttctcctggagaagtggtatcacctcccactgccatctgattg 737
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 937
Length adjustment: 10
Effective length of query: 525
Effective length of database: 927
Effective search space: 486675
Effective search space used: 486675
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
