BAC Information

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BAC

Clone NameMSMg01-395M24
Chromosome7 (Build37)
Map Location 146,914,008 - 146,914,399
singlet/doubletsinglet
Overlap genenone
Upstream geneMapk1ip1, Ppp2r2d, Bnip3, EG668784, LOC669185, 6330417G02Rik, Dpysl4, Stk32c, LOC100038956, Lrrc27, Pwwp2, Inpp5a, Nkx6-2, E030019B06Rik, 9330101J02Rik, LOC100043472, EG434253
Downstream geneEG664869, Gpr123, LOC244229, Kndc1, Utf1, LOC100039095, 6430531B16Rik, Adam8, Tubgcp2, Zfp511, Msx3, Drd1ip, Prap1, 1810014F10Rik, Echs1, Paox, Mtg1, Sprn, Olfr522, Olfr523, Olfr524, E430002D04Rik, 5830411N06Rik, EG622335, Olfr525, Olfr527, GA_x5J8B7W72BC-152913-152037, Olfr60, GA_x5J8B7W72BC-125691-125311, Olfr530, LOC622973, Olfr531, Olfr532, Olfr533, Olfr534-ps1, Olfr535, Olfr536, Olfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46, Olfr61, Olfr53, Olfr539, GA_x5J8B7W3EKE-4574231-4574913, Olfr45, Olfr541, GA_x5J8B7W3EKE-4522784-4521912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395M24.T7 (MSMg01no395_m24.b1)MSMg01-395M24.TJ (MSMg01no395_m24.g1)
ACCAG496538AG496539
length812828
length of high quality
(start - end)
392 (71 - 462)245 (73 - 317)
definitionCHROMAT_FILE: MSMg01no395_m24.b1 PHD_FILE: MSMg01no395_m24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:46 2005CHROMAT_FILE: MSMg01no395_m24.g1 PHD_FILE: MSMg01no395_m24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTAGAATCCGCGGA
ATTCTAGCACAATTCCCCGTTTTCCCAGCTATAAAGACAGGTGCCATAGA
GGCTGTTCCTGAGCCCAGAGTGCCCAGAAACACTGAATGGGTGATGTCTG
CTTGACAGCCCCAGCCCCAGGATAGATGCCTATGCGTGTTCTAGGTCATA
CTTGATGTTTCCATTGCCCTAGAAATAAGCTAATGGCTCTTCAATTGCTC
TTACTAGTGACCTTCCCGTGTCCTACTGATCCCATCATCCCAGAGGTTGA
CACCAGACAGTAGCTTTGGGACTTTGTTGCACAGTTCAAGTTTTCCATAC
CCTAAGTAGAGAAGCTTCATCAGATGAAAGGGTGGCTGGCAGTACACATA
GGTGATGAGAGACCCTGGGGCGTCCTGGTGCTCCAACTGCCTGCCCAGCC
TCCTCCATCCCAAGCCACCAGGAGTTGAGAGGTAAGGTCCTGCACTCAAC
CCTCTTGATCGTTTTCAAAGATTTGTCTAGGCGAACTGGTCTCTTCCAGG
AAGAATAGGAGGGTAGCTCTTCCCACCCATATCTTCCCGGCTAACCTAGG
CCTCTTCCTTTTGGCTTTTTGGTTTTCCCCGCTGTGCCTTCTACGCCGTG
AAAACGCCTTTTCTTTTAAAATAACCCAACCTCTTCTGCGGTCGTGCTTC
CCCCCGGGTTTCACACCTAATTCCTCTTTTTTTATTCCTCTCTCCCCGGT
TTTCTTCACTCCTTTACACTTTTCCTTCTTTCTCTATACAGATTTCTTTA
CTCGCCTTTTTG
CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTATCATGAA
TGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGATCA
TGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGAT
TTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTC
TTTATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTT
TATTGAGGATTTTTGCATCGATANNTTTAAGAGAAATTGGTCTGAAGTTC
TCTATCTTTGTTGTTTCTTTCTGTGGTTTAGGTATCAGAGCAATAGTGGC
TTCCTAAAAAGACCCGGCTACAGTACTTTCTACTTCTATTTTGTGAAACA
ATTTGCGTCTCATTTGTACTTAATCTTTTTTTTAATGTTCGGCAAATCTT
CTGACTTATATTCTCCTGTTCCTCGGGTTTTTTTTTCTCTGTCTTACTTA
TTACCCCATTGTTATCACTTTTTCCATATCTTTTTTTATTCCCCCCTTTT
TTTCCCCTTATTTCCCCCCTTTCCCTTTTTACATATCTCTCTACCTCACA
CCTCTTCGCTTCCACTTTTTTTTCTCTTCTTCTTTTATTTCTTACCCACT
TCTTACCCCTTATCTATTTTTCCTTCTATTCCCTTCTTTGTTTCTCTCCC
CTCTTATCCTATCTATCTATTACGTTCTCCTTTCTCTCCCTACCCATTCC
ATTCCCCTTCCTTTTTCACATTTCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_m24.b1 MSMg01no395_m24.b1 CHROMAT_FILE:
MSMg01no395_m24.b1 PHD_FILE: MSMg01no395_m24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:46 2005
         (392 letters)



>mm_chr7_146913808_146914599
          Length = 792

 Score =  673 bits (348), Expect = 0.0
 Identities = 381/392 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcccagctataaagacaggtgccatagaggctgttcctgagcccagagtgcccagaaa 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 tttcccagctataaaggcaggtgccatagaggctgttcctgagcccagagtgcccagaaa 533

                                                                       
Query: 61  cactgaatgggtgatgtctgcttgacagccccagccccaggatagatgcctatgcgtgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 532 cactgaatgggtgatgtctgcttgacagccccagccccaggatagatgcctatgcatgtt 473

                                                                       
Query: 121 ctaggtcatacttgatgtttccattgccctagaaataagctaatggctcttcaattgctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ctaggtcatacttgatgtttccattgccctagaaataagctaatggctcttcaattgctc 413

                                                                       
Query: 181 ttactagtgaccttcccgtgtcctactgatcccatcatcccagaggttgacaccagacag 240
           |||| |||| |||||| ||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 412 ttaccagtgcccttcctgtgccctactgatcccatcatcctagaggttgacaccagacag 353

                                                                       
Query: 241 tagctttgggactttgttgcacagttcaagttttccataccctaagtagagaagcttcat 300
           ||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tagctttgggacactggtgcacagttcaagttttccataccctaagtagagaagcttcat 293

                                                                       
Query: 301 cagatgaaagggtggctggcagtacacataggtgatgagagaccctggggcgtcctggtg 360
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 292 cagatgaaagggtggctggcagtacacataggtgatgagagaccctggggtgtcctggtg 233

                                           
Query: 361 ctccaactgcctgcccagcctcctccatccca 392
           ||||||||||||||||||||||||||||||||
Sbjct: 232 ctccaactgcctgcccagcctcctccatccca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 792
Length adjustment: 9
Effective length of query: 383
Effective length of database: 783
Effective search space:   299889
Effective search space used:   299889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)