BAC Information

Click to search

BAC

Clone NameMSMg01-395N15
Chromosome7 (Build37)
Map Location 135,015,070 - 135,015,253
singlet/doubletsinglet
Overlap geneZfp668
Upstream gene1110032O16Rik, Kctd13, A830007L07Rik, Sez6l2, D830044I16Rik, Cdipt, Mvp, 2900092E17Rik, Maz, Kif22, 1810010M01Rik, AI467606, Qprt, Spn, Cd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik, Sephs2, Itgal, Zfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c, Setd1a, Hsd3b7, Stx1b2, Stx4a
Downstream geneZfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72, LOC436010, EG668675, Itgam, Itgax, Itgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158, EG628781, Rgs10, LOC100043643, Tial1, Bag3, EG639030, Inpp5f, LOC100043651, 1110007A13Rik, Sec23ip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395N15.T7 (MSMg01no395_n15.b1)MSMg01-395N15.TJ (MSMg01no395_n15.g1)
ACCAG496568AG496569
length839766
length of high quality
(start - end)		203 (67 - 269)242 (74 - 315)
definitionCHROMAT_FILE: MSMg01no395_n15.b1 PHD_FILE: MSMg01no395_n15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:49 2005CHROMAT_FILE: MSMg01no395_n15.g1 PHD_FILE: MSMg01no395_n15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAAAAATTGCGGCGCTAAACGACTCCTATTCAGACAGGACCGCGGAATT
CTAATATTACACTGAGTTTTCGGATGTTCTTAGGTGACTCCTGTCAAAGC
CATTGGAGACCCACTGGTTGAGCACCATTGTTCTAGAAGACCAGTGGGTG
CTCTGCTCGGCAATCTCTCTGGCCTGTGACTTTTTTTTTCTTTCTTTCTT
TCTTTCTTTTTTTTTTTTTTTTTTTTTTTGGGTTTTCGAGACAGGTTTTC
TCTGTATAGCTCTGGTTGTCCTAGAACTCACTCTGTAGACCAGGCTGCCC
TTGAACTCATTTTATCTTTTGCCTCTGCCTCTCAAGCGATGGGATTAAAG
GTGTTCGCCCCCATGACCGGCATGTGACTTGTTCTAAAAGATTTTTTTAT
TTACCATACGCTATTCCCCCCGCCCCTGTTTTTCTTATTTTCCATAACCA
GCACTTTTTATTTTTTTTACCCACGCCCTCCTATTTTTTTAACCCTCCTC
TGCCATGCATCTCTTTCCAATAACCCCCCAACTATTTCTTTTATCCTTAC
CTAGTCAATACATTCTTTTCTCTTTCACCCATACCCTTTCTCTCACGACC
TTTTTTACCACTATTTTTTTTTTTTTTTTCTCACCCTCCTCTCTTATATT
TCTCATAATTTACCCTTCTCCCTCCCCCCTCCCCCTTTCTTCCCTATTTT
CTCTCTTATAAGTCTTTCCCCACCTACTTGCACACTATTTTATCTTATTT
TCCCCCCCTCCCCGCTCTTTTGTTTTCCTTTTATCACAAATTTTTCTTCC
TCCCCTCATATTTTCCTTCTCTTATTCTTTTCCTTCCCC

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTGAAACCAGGAAGACAGGCAGCTGT
GCAGTGCCCTATGTGGGTGCTAGGAAGCAAACTCAGACTCTCTGGCAGAA
CAATACTCTTAACCACTGAGCTAATGCTCCAGCTCACAAAATATTTAAAA
ACGAAGCAAAACAAAAATGTAGAGATGACTCAGCAGTTTAGAGCACTGGC
TGCTCTTGCAGAGTCCCAGGAATTAAACTCACATCACCCAGATGGTGGCT
CTCAGCTGTCTGTAATTTTATTTCCAAGGGCTCCCACCTGCTCTTCTGGC
TTCTGTGCACACGAGGAATGGTGCATATATTATATATTCAGATAAAACAT
TCATATACATAAAAATTTTTAAAGCGTATAAAGTAGGCTAGGTGTGGTGA
CACACAGTTTTAATCACCGCACTCTAAAAGGCAGAGGTAGACAGTCCTCT
GCAAGTTCCAGGCCAGTCAAGACCTCAGAGTGACATTCTGTCTCAAGACA
ACAACAAACGCTGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTCAGG
AAGCAGAGACCGACAGGCAGATTTCTGAGTTCCAGGCCAGGCCTGGCTAT
TAGTGAGTTCCAGAATAGTCCAGGCTACCAGAAAAACCCTGTCTCGAAAA
AAACTCAACCTCAACCCAAACACCACTTCTAGAACTTATTTATGCCTGGT
ACCCCACCCGGGGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_n15.b1 MSMg01no395_n15.b1 CHROMAT_FILE:
MSMg01no395_n15.b1 PHD_FILE: MSMg01no395_n15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:49 2005
         (203 letters)



>mm_chr7_135014940_135015542
          Length = 603

 Score =  300 bits (155), Expect = 4e-86
 Identities = 182/199 (91%), Gaps = 15/199 (7%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttcggatgttcttaggtgactcctgtcaaagccattggagacccactggttgagcacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ttttcggatgttcttaggtgactcctgtcaaagccattggagacccactggttgagcacc 255

                                                                       
Query: 61  attgttctagaagaccagtgggtgctctgctcggcaatctctctggcctgtgactttttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 attgttctagaagaccagtgggtgctctgctcggcaatctctctggcctgtgactttttt 195

                                                                       
Query: 121 tttctttctttctttctttctttttttttttttttttttttttgggttttcgagacaggt 180
           ||||||| |||   ||||||||||||||||||           || ||||||||||||| 
Sbjct: 194 tttcttt-ttt---tctttctttttttttttt-----------ggtttttcgagacaggg 150

                              
Query: 181 tttctctgtatagctctgg 199
           |||||||||||||||||||
Sbjct: 149 tttctctgtatagctctgg 131


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 203
Length of database: 603
Length adjustment: 8
Effective length of query: 195
Effective length of database: 595
Effective search space:   116025
Effective search space used:   116025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |