BAC Information

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BAC

Clone NameMSMg01-396B02
Chromosome7 (Build37)
Map Location 134,117,846 - 134,290,846
singlet/doubletdoublet
Overlap geneD830044I16Rik, Cdipt, Mvp, 2900092E17Rik, Maz, Kif22, 1810010M01Rik, AI467606, Qprt, Spn
Upstream geneGsg1l, Xpo6, Sbk1, LOC100043495, Lat, 2210013K02Rik, Nfatc2ip, Cd19, Rabep2, Atp2a1, Sh2b1, Tufm, Atxn2l, Eif3s8, Cln3, Apob48r, Il27, Nupr1, Ccdc101, Sult1a1, LOC629029, Giyd2, Bola2, Coro1a, Snrp1c-ps1, LOC100043044, Mapk3, Gdpd3, Ypel3, Tbx6, Ppp4c, Aldoa, 1500016O10Rik, 4930451I11Rik, Doc2a, Ccdc95, Hirip3, 1110032O16Rik, Kctd13, A830007L07Rik, Sez6l2
Downstream geneCd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik, Sephs2, Itgal, Zfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c, Setd1a, Hsd3b7, Stx1b2, Stx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72, LOC436010, EG668675, Itgam, Itgax
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396B02.T7 (MSMg01no396_b02.b1)MSMg01-396B02.TJ (MSMg01no396_b02.g1)
ACCAG496734AG496735
length541699
length of high quality
(start - end)		368 (51 - 418)468 (72 - 539)
definitionCHROMAT_FILE: MSMg01no396_b02.b1 PHD_FILE: MSMg01no396_b02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:06 2005CHROMAT_FILE: MSMg01no396_b02.g1 PHD_FILE: MSMg01no396_b02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,117,846 - 134,118,208)(134,290,447 - 134,290,846)
sequence
TATCTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGAT
CCGCGGAATTCTTATAGGTCTGACTCTCTACCGTGCATTCTGTCCCCCCA
AACATCTAACTCCTAACACATGGAACGGCACACAGGGGAAGCTGGAAATG
TTGGAATTGAATAACCTCATACAAACCTTTTCACGAGGAGATGGCAGAAG
GTGTGCCTTGGTTCGGGTTCGATTTTTGTCAGAGCTGGAGATGACAGAAG
ACAACAGAATAGGCTGAGAATCAGGAACTGGAGCATCAGGAGGGAATAGA
ATAGAACTTCATGGTTGAAAACTTCCCCCTACCCTGCTGGGATGCTGTCA
ACCCTTGCTCTCTCCCCACAGGCTCCTGGGAGAAGGACAGAGCCTCACTC
ACCGGGTGTCAGTGCCTCCGGGTCTTAAGTGAAGAACACTGGGGAATTAG
AGGCCTCCCAGTTAAAGGGAACCAACTTTTCCCCCATGTTTTAAGAAAGA
GTTTGTGGGGCTAAGAAGGCAAGGGCAAGGGGGGACCCAAT

TGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAAGCTTTACCTGCTTCTGTCTCTTGAGT
GCTGGGATTAAGTGTGTACCACCACTGCCCTGTGACTTTAAGCAATTTAA
ACAGAGACAGGAGACTGCAATTCTGACCGCTTGGGCAGATGGAAGACTTA
TACAGCAAAAATATTGTCAGGATTATTTTTCTTTCCTGGCTGTCCTGGAA
CTAGATTTATAGACCAAACTGGCCTTGAATGCAGATCCTGCCTCTGCCTT
TAAGTGCTAGGATTAAAGCATGTGTCACAATACCTGGCTGCAGGATTATT
TAAGTGCCCCTGGGCTGTTCCTTTGGAGTGCTTGCTACCCAGGTCCATTC
TACCCACCAGGCAGGATTATGCTTTTCTTGGTAGGAGGGCAGGGGACTTA
AAAGATTGACCAAGACTTAATGGAGGCTGTGACCCTGTGCTGACCCCCTT
GAGCTGCCCCCTAGAGGACTGTTCTTTGAACTGGGATAGTTGTATTCTAC
TTTGTGTACCTTAATGTTTCCTAAAGGAGTTTATTAATAAGGCCTCCTAT
AACATCGGTTTTCCCTGAATCTTTGTGCCCGTGGATATAGGGTCCCTGGG
GCAAAACCTGGTGGTTTAAGCCCCTCTTGTCCCTCTCAAATCAACTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_b02.b1 MSMg01no396_b02.b1 CHROMAT_FILE:
MSMg01no396_b02.b1 PHD_FILE: MSMg01no396_b02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:06 2005
         (368 letters)



>mm_chr7_134117641_134118408
          Length = 768

 Score =  679 bits (351), Expect = 0.0
 Identities = 360/363 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcttataggtctgactctctaccgtgcattctgtccccccaaacatctaactccta 65
           ||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 206 gaattcttatagggctgagtctctaccgtgcattctgtccccccaatcatctaactccta 265

                                                                       
Query: 66  acacatggaacggcacacaggggaagctggaaatgttggaattgaataacctcatacaaa 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 acacatggaacggcacacaggggaagctggaaatgttggaattgaataacctcatacaaa 325

                                                                       
Query: 126 ccttttcacgaggagatggcagaaggtgtgccttggttcgggttcgatttttgtcagagc 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ccttttcacgaggagatggcagaaggtgtgccttggttcgggttcgatttttgtcagagc 385

                                                                       
Query: 186 tggagatgacagaagacaacagaataggctgagaatcaggaactggagcatcaggaggga 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tggagatgacagaagacaacagaataggctgagaatcaggaactggagcatcaggaggga 445

                                                                       
Query: 246 atagaatagaacttcatggttgaaaacttccccctaccctgctgggatgctgtcaaccct 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 atagaatagaacttcatggttgaaaacttccccctaccctgctgggatgctgtcaaccct 505

                                                                       
Query: 306 tgctctctccccacaggctcctgggagaaggacagagcctcactcaccgggtgtcagtgc 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tgctctctccccacaggctcctgggagaaggacagagcctcactcaccgggtgtcagtgc 565

              
Query: 366 ctc 368
           |||
Sbjct: 566 ctc 568


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space:   272481
Effective search space used:   272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no396_b02.g1 MSMg01no396_b02.g1 CHROMAT_FILE:
MSMg01no396_b02.g1 PHD_FILE: MSMg01no396_b02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:06 2005
         (468 letters)



>mm_chr7_134289979_134290846
          Length = 868

 Score =  758 bits (392), Expect = 0.0
 Identities = 398/400 (99%)
 Strand = Plus / Minus

                                                                       
Query: 69  aagcaatttaaacagagacaggagactgcaattctgaccgcttgggcagatggaagactt 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 aagcaatttaaacagagacaggagactgcaattctgaccgcttgggcagatggaagactt 809

                                                                       
Query: 129 atacagcaaaaatattgtcaggattatttttctttcctggctgtcctggaactagattta 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 atacagcaaaaatattgtcaggattatttttctttcctggctgtcctggaactagattta 749

                                                                       
Query: 189 tagaccaaactggccttgaatgcagatcctgcctctgcctttaagtgctaggattaaagc 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 tagaccaaactggccttgaatgcagatcctgcctctgcctttaagtgctaggattaaagc 689

                                                                       
Query: 249 atgtgtcacaatacctggctgcaggattatttaagtgcccctgggctgttcctttggagt 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 atgtgtcacaatacctggctgcaggattatttaagtgcccctgggctgttcctttggagt 629

                                                                       
Query: 309 gcttgctacccaggtccattctacccaccaggcaggattatgcttttcttggtaggaggg 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gcttgctacccaggtccattctacccaccaggcaggattatgcttttcttggtaggaggg 569

                                                                       
Query: 369 caggggacttaaaagattgaccaagacttaatggaggctgtgaccctgtgctgaccccct 428
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 568 caggggacttaaaagattgaccaggacttaatggaggctgtgaccctgtgctgcccccct 509

                                                   
Query: 429 tgagctgccccctagaggactgttctttgaactgggatag 468
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tgagctgccccctagaggactgttctttgaactgggatag 469


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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