Query= MSMg01no396_g19.b1 MSMg01no396_g19.b1 CHROMAT_FILE:
MSMg01no396_g19.b1 PHD_FILE: MSMg01no396_g19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:32 2005
(490 letters)
>mm_chr7_135049361_135050250
Length = 890
Score = 897 bits (464), Expect = 0.0
Identities = 473/476 (99%), Gaps = 1/476 (0%)
Strand = Plus / Minus
Query: 16 agtgaaatttt-ccttaaaaagaataagctagtaagtaagtacgtacgtatatagtttaa 74
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 agtgaaattttgccttaaaaagaataagctagtaagtaagtacgtacgtatatagtttaa 827
Query: 75 aaacaaactggctggagagatggctcagcagtgaagagcacttgcccttccttatagagg 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 aaacaaactggctggagagatggctcagcagtgaagagcacttgcccttccttatagagg 767
Query: 135 acctgagtttggtccccagcacccacagggtgcacagacacacatgcagacaaaataccc 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 acctgagtttggtccccagcacccacagggtgcacagacacacatgcagacaaaataccc 707
Query: 195 acatgtatagaaataatttaattttaaaagaaaatgaaaacaaagaagaaaccttgctgc 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 acatgtatagaaataatttaattttaaaagaaaatgaaaacaaagaagaaaccttgctgc 647
Query: 255 atactacgcaaggactcaagacacaggcctccctgccggagccacccactccccaccatt 314
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 agaccacgcaaggactcaagacacaggcctccctgccggagccacccactccccaccatt 587
Query: 315 ctagtctcacctggcaaaatccacccacttctcgataatcttcttgggcgacagacgagt 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 ctagtctcacctggcaaaatccacccacttctcgataatcttcttgggcgacagacgagt 527
Query: 375 acagatgatgccaacaaaatcaggctggcaggaaagagaaggtcagaactagcaacactt 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 acagatgatgccaacaaaatcaggctggcaggaaagagaaggtcagaactagcaacactt 467
Query: 435 ccacccaacttcagttgccaaatcccacaatttctggaatgccagagcaagcccca 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ccacccaacttcagttgccaaatcccacaatttctggaatgccagagcaagcccca 411
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space: 422400
Effective search space used: 422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no396_g19.g1 MSMg01no396_g19.g1 CHROMAT_FILE:
MSMg01no396_g19.g1 PHD_FILE: MSMg01no396_g19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:32 2005
(399 letters)
>mm_chr7_134856792_134857590
Length = 799
Score = 733 bits (379), Expect = 0.0
Identities = 394/399 (98%)
Strand = Plus / Plus
Query: 1 aacaagagttggagaaatccaaagatatgtgaactttgaccttaaagagtttctggatag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacaagagttggagaaatccaaagatatgtgaactttgaccttaaagagtttctggatag 260
Query: 61 tatcggtgatgtagagtgaggagtctcaggatcagacagattcacacggataaaagaagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatcggtgatgtagagtgaggagtctcaggatcagacagattcacacggataaaagaagc 320
Query: 121 tactttggaagtatgaacaaattccctaaagtggaaggaagaaattgatttgagaatagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tactttggaagtatgaacaaattccctaaagtggaaggaagaaattgatttgagaatagg 380
Query: 181 gagaacttggaggcagcactaagaaggaggtatttgaatttggtcctaatagtatttcaa 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 gagaacttggaggcagcactaagaaggaggtatttgaatttggtcctagtagtatttcaa 440
Query: 241 tagtgatttgaggacaggagagacatctacgtagagaaactgcttggcggagatctggtg 300
|||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 441 tagtgacctgaggacaggagagacatctatgtagagaaactgcttggtggagatctggtg 500
Query: 301 cctgggatggggcagattcttcgtaggttgaatattagcatccagagcagagactctggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctgggatggggcagattcttcgtaggttgaatattagcatccagagcagagactctggg 560
Query: 361 ttcagggagagccagcttgggaaagatggttaaggagtg 399
|||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcagggagagccagcttgggaaagatggttaaggagtg 599
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space: 308100
Effective search space used: 308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
