BAC Information

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BAC

Clone NameMSMg01-396I08
Chromosome7 (Build37)
Map Location 144,763,929 - 144,980,567
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC546009, EG621677, EG668771, Mgmt, EG621804, Ebf3, 9430038I01Rik, Txnl2
Downstream geneLOC435235, Tcerg1l, LOC100043290
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396I08.T7 (MSMg01no396_i08.b1)MSMg01-396I08.TJ (MSMg01no396_i08.g1)
ACCAG497079AG497080
length750739
length of high quality
(start - end)
194 (114 - 307)331 (72 - 402)
definitionCHROMAT_FILE: MSMg01no396_i08.b1 PHD_FILE: MSMg01no396_i08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:40 2005CHROMAT_FILE: MSMg01no396_i08.g1 PHD_FILE: MSMg01no396_i08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,980,376 - 144,980,567)(144,763,929 - 144,764,255)
sequence
TGCGGCGCTAAACGACTCCTAATTCATCACCTGCGCGGAATTCTTAAGAT
TTCAGTACCACAGAGGGAAAGNCAAGNCAGAGATGGGNNNTCTGTGGGAT
CTAATGTCACCCTGACAATAGCATCTTTAACAGCAGCACTTTGGTGACAT
GGTGGGACAAGCCAATGATTATGGGTCAGAAGTCAATGAAGAGAGCAATA
GAGGGAGGGAATGGCCAGAGTTGTGACAGGGTGCAGCTATTTTTTCCAGA
GAGTTAGTTTGGCAGCAGCAAAGCTTCCTGAGGAAAGAGTCTGACCTGCA
AAATGTTTTTTTCTTTCTTCNANAAAGGNNGCAAGCATAGAGCCAGAGGA
TGTATGCCCGGACAGATGAGTGGAAAGATGGATGCATAGATAGAGATGGG
GACCGCCCCCCACACTATGACACTGGGGAGGGCATGAGGCTGGATCTGTC
CTCTGCGAACAGGAAAGGATCACCACGTCACACTTCTGTGGTACTTGCTA
CAGGCATGTGCGATGAATTTATATGTAGGAAGAGACTACTACGGAGGCTT
TCATGCTTGCATGTGTAATTCTTGTAGTTCCCCTCTGCCTGGCCTGTGGA
ACCTGCTTCTTTCCCTTTTTTTTTCCCCCTTCAGCAAACGGCCCCCTTTT
TTTTTTTTTTTTTATATGTTGTCACCCCCTTCTTTTTTTCTCCCTGAACG
CATTCCTCCTAGCCACCCCCATAAATATCCCATTCTCTTTATTTTTGTTT

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTCCAGAAATACAGGTCTATACCTTCTAACTTTGGCACCTCA
GAGTGTGACTGTGCTTAGAGATGAGTATCCTCCTAAGAAGAGAATCACAC
AGAAGGAAGAACAGGTGGGGACATATGGAGCACATGGGGACAAACACTGT
CTACTAGCCAAGGTGTCTTAGTTTGGGTTTCTAGTGCTATGAAGAGACAC
CATGACCATAGCAACTCTTTTAAAGGAAAACATTTCACAGGAACTGGCTT
AGAATTCAGAGTGTATCTCTCTCTGGGAGAGTGTCAGAATAAGCCTTCCC
CATGACCCCTAGCAGTTGCCATTCAGGGCTGGACTGCAGCATGAAGCAAG
GGCAAACTACTCACCCCGAAGAGGTAACTGGTCTCTCATGGTGACTGTGC
ACCTTATGTGTATGTACCTACTGCATGCGTACATGTTCAGGGTGAGACGT
CTGCACTGATTGTACTTGCCACTTGTATCCCAACAGCTGGAAACTTTTGA
TTGTTCGCGTGTGTGTGTGTCCGTCTGCCTGCCTGTGTTTATGGTCTTTA
TTGTCTTCCACTTTTGGGTATGTTATCGGCTTTATCTCTTTTCTTTCTCC
CTTCTTCCCCCTGCCTCCCACCGTTGTTGTTATTTCCGTTATTGGCTCCC
CCCCTTACGGCTCCCCCCTTCCTTTTCTCTTTTTTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_i08.b1 MSMg01no396_i08.b1 CHROMAT_FILE:
MSMg01no396_i08.b1 PHD_FILE: MSMg01no396_i08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:40 2005
         (194 letters)



>mm_chr7_144980176_144980769
          Length = 594

 Score =  333 bits (172), Expect = 5e-96
 Identities = 187/192 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gacaatagcatctttaacagcagcactttggtgacatggtgggacaagccaatgattatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gacaatagcatctttaacagcagcactttggtgacatggtgggacaagccaatgattatg 333

                                                                       
Query: 61  ggtcagaagtcaatgaagagagcaatagagggagggaatggccagagttgtgacagggtg 120
           ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 332 ggtcaaaagtcaatgaagagagcaatagagggagggaatgaccagagttgtgacagggtg 273

                                                                       
Query: 121 cagctattttttccagagagttagtttggcagcagcaaagcttcctgaggaaagagtctg 180
           ||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 cagctatgtcttctagagagttagtttggcagcagcaaagcttcctgaggaaagagtctg 213

                       
Query: 181 acctgcaaaatg 192
           ||||||||||||
Sbjct: 212 acctgcaaaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no396_i08.g1 MSMg01no396_i08.g1 CHROMAT_FILE:
MSMg01no396_i08.g1 PHD_FILE: MSMg01no396_i08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:40 2005
         (331 letters)



>mm_chr7_144763725_144764455
          Length = 731

 Score =  594 bits (307), Expect = e-174
 Identities = 322/327 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   tataccttctaactttggcacctcagagtgtgactgtgcttagagatgagtatcctccta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tataccttctaactttggcacctcagagtgtgactgtgcttagagatgagtatcctccta 264

                                                                       
Query: 65  agaagagaatcacacagaaggaagaacaggtggggacatatggagcacatggggacaaac 124
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 265 agaagagaatcacacagaaggaagaacaggtggggatatatggagcacatggggacaaac 324

                                                                       
Query: 125 actgtctactagccaaggtgtcttagtttgggtttctagtgctatgaagagacaccatga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 actgtctactagccaaggtgtcttagtttgggtttctagtgctatgaagagacaccatga 384

                                                                       
Query: 185 ccatagcaactcttttaaaggaaaacatttcacaggaactggcttagaattcagagtgta 244
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 385 ccatagcaactcttttaaaggaaagcatttcacaggaactggcttagaattcagagtgta 444

                                                                       
Query: 245 tctctctctgggagagtgtcagaataagccttccccatgacccctagcagttgccattca 304
            ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 445 gctctcactgggagagtgtcagaataagccttcaccatgacccctagcagttgccattca 504

                                      
Query: 305 gggctggactgcagcatgaagcaaggg 331
           |||||||||||||||||||||||||||
Sbjct: 505 gggctggactgcagcatgaagcaaggg 531


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)