BAC Information

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BAC

Clone NameMSMg01-396L17
Chromosome7 (Build37)
Map Location 61,505,515 - 61,505,854
singlet/doubletsinglet
Overlap genenone
Upstream geneGm1865, LOC100040718, LOC668789
Downstream geneMrps33p, LOC622146, Luzp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396L17.T7 (MSMg01no396_l17.b1)MSMg01-396L17.TJ (MSMg01no396_l17.g1)
ACCAG497237AG497238
length754723
length of high quality
(start - end)		472 (66 - 537)343 (69 - 411)
definitionCHROMAT_FILE: MSMg01no396_l17.b1 PHD_FILE: MSMg01no396_l17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:56 2005CHROMAT_FILE: MSMg01no396_l17.g1 PHD_FILE: MSMg01no396_l17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
ATGACTATCCCAAATTCATACAATATCTTTCCACAAATCCAGCCCTTCAA
AGAATAATAACAGAAAAAAACCAGTACAAGGACGGAAACCACGCCCTAGA
AAAAGCAAGAAGATAATCCTTCAACAAACCTAAAAGAAGACAGCCACAAG
AATAGAATGCCAACTTTAACAACAAAAATAATGGGAAGCACCAATTACTT
TTCCTTAATATCTCCGAATATCAATGGGCTCAACTCCTCAATAAAAAGAT
ATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTACCTA
CAGGAAACTCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTAAAAGG
CTGGAAAACAATTATCCAAACAAATGGTGTGTAGAAACAAGCTGGAGTAG
CCATTCTAATATCTACCATAATCGACTTCCAACCCAAAGTAATCAAAAAA
GACAAGGAGGGGCACTTCATACTCATCACAAACAAAATCTCCCAAGAGGA
ACTCTCAATTCTGAATATCTATGCTCCCAATTCAAGGGCAGNCACATTCT
TTAAAGAAACTTTTAGTAAGGTCCAAGCCCCCATTGTGCCTCACCCATAA
TAATGGGGAGATTTCCTCCCCCCCCTTTCCCCCTGGGAAGGATCTGGGAA
CCGAAAATTAACTGGGACCCCGTGGGCCTAAACAAAATGTTGAATAAGGG
GCCN

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACTGGCTTCCTTTACCCAGCTCCTTAGGCATT
TCATTCTCTTTTCCCTTGGATGATTTATCATTCAGGTCTCTACATTTGAA
TTTGGAGTACATAAATATTTCAAACCTAATTTAAAAAAAAAAATCAGGGG
TTCAGGAAGGTAAATACACATAATGCTTCACTCCTGATGTAATTTCAAAA
CTGGCTTTGATCTAATTTTACCTTTTAATGGCTGTTTTAGGGGTGAATGT
TTAGGTCATTGGGTACTGGTGATTAATAGGGTAAAATTTTCCACTGTGTG
AATGTTTTGAGAAAGAAATTTTGAATTTTTCAGTGTGTGGGAATTATTGA
AGAGTGAATCCCAACTTATGACTGAAATTCTATGACTAATTAATTTTTAA
ATTCAATGTATTACTCTCCAGTGGAACAGTTTTGTTTTATATAACCTGTC
ACTGTTAATATTCGCTGCGAGTGATCTTTCTCCCTTTAGCAACTTTTACG
CCATTTCCTTTTTATTTCTTTTCCTTTCTGGACCGTTTCTGTGTCCTCTA
TTTTACCCCCTTTTCCAAATCTTCCCTTTTTTGCCTCCCTATCAACTTAT
AGCTTTAACAAATAATTCCTCAATATTATCTTCCTTTTTTTTTTCTCCTT
TCCTTTTTGTTAATATTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_l17.g1 MSMg01no396_l17.g1 CHROMAT_FILE:
MSMg01no396_l17.g1 PHD_FILE: MSMg01no396_l17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:56 2005
         (343 letters)



>mm_chr7_61505315_61506057
          Length = 743

 Score =  574 bits (297), Expect = e-168
 Identities = 329/345 (95%), Gaps = 10/345 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   actggcttcctttacccagctccttaggcatttcattctcttttcccttggatgatttat 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 540 actggcttcctttacccagctccttaggcatttcattctcttctcccttggatgatttat 481

                                                                       
Query: 61  cattcaggtctctacatttgaatttggagtacataaatatttcaaacctaa-----ttta 115
           |||||||||||||| ||||||||||||||||||||||||||||||||||||     ||| 
Sbjct: 480 cattcaggtctctaaatttgaatttggagtacataaatatttcaaacctaatttttttt- 422

                                                                       
Query: 116 aaaaaaaaaatcaggggttcaggaaggtaaatacacataatgcttcactcctgatgtaat 175
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ----aaaaaatcaggggttcaggaaggtaaatacacataatgcttcactcctgatgtaat 366

                                                                       
Query: 176 ttcaaaactggctttgatctaattttaccttttaatggctgttttaggggtgaatgttta 235
           ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 365 ttcaaaactggatttgatctaattttgccttttaatggctgttttaggggtgaatgttta 306

                                                                       
Query: 236 ggtcattgggtactggtgattaatagggtaaaattttccactgtgtgaatgttttgagaa 295
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 305 ggtcattgggtactggtgattaatagggtaaagttttccactgtgtgaatgttttgagaa 246

                                                        
Query: 296 agaaattttgaatttttcagtgtgtgggaattattgaagagtgaa 340
           ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 245 agaaactttgaatttttcagtgtgtgggaattattgaagagtgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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