BAC Information

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BAC

Clone NameMSMg01-396N08
Chromosome7 (Build37)
Map Location 142,255,669 - 142,426,626
singlet/doubletdoublet
Overlap geneDock1
Upstream geneAdam12, A130023I24Rik, 4933400E14Rik, LOC100043248, LOC100043699, LOC668750, B830028B13Rik, EG668693
Downstream geneLOC100043254, Foxi2, Clrn3, Ptpre, Mki67, LOC668764
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396N08.T7 (MSMg01no396_n08.b1)MSMg01-396N08.TJ (MSMg01no396_n08.g1)
ACCAG497314AG497315
length762767
length of high quality
(start - end)
243 (71 - 313)339 (68 - 406)
definitionCHROMAT_FILE: MSMg01no396_n08.b1 PHD_FILE: MSMg01no396_n08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:04 2005CHROMAT_FILE: MSMg01no396_n08.g1 PHD_FILE: MSMg01no396_n08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,426,386 - 142,426,626)(142,255,669 - 142,256,007)
sequence
ATTTGCGTGCGCAAAACGACTCACTATTTTCAGAAACATCCGCGGAATTC
AAAACCTTTCTCTAAAAAAACAAAGGCTAAAGTCTGAAAGATGGGGCCAT
AGAGTTAATCCTCATACAATAGATTAGAAAGAGGACTCAGGCTGTGCCTA
TCCAGTAGGGAATGCAGCTTTGCTGGCTGGTCACAGTATAAAGACCAGAG
GGGCCCAGTATAAAATAAGGAGTATGGATTCCTGAGGGTTCTACTGACCA
GATCTAATGCCAAAGTCAAAACTATAGAGCAAGGACAAGCAATGGAGCTG
CAAGTCACTGGTTTTCTGTTTAGTTGTAATCAGCTCGATCTCCCTGGGCT
CCTAGGAATTTTAGCTTCTCCAGACCCTTGTCCTCTGGGTTCTGGGTCTC
TGTGTGCCCCCCCCCGCAAAAAAGCATCTGAAAGAACATTCTCTCAAGAT
GGATGCAGATGAATCTGATTAACAATCTGAGGCTCTCAGTCTACTCATAA
CATGACAAATCCGTTTGCCTATGCCGCACAAGCCTGGAGTTCTGAATCTC
TGCCCTATCCAAGGAACGCCCGCATGGTTAACCCCACTCCCCAATCTGGT
ACTTTGCGACCTTTCAGCCCCTCCTTTCTATCCTGTTTTGTTGTTTACCC
TGCCGCTCTCTTCCCCTTTTAAAAATTCAAAAAATAGTTCCCTTCCCTGG
TGTCCCTCCTTTATTTCCCCGCCTTGTTCCTTCCCTCTTCCCTTGTTGAA
TTCCTCTTTCCT
TGTGTGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCCTTTGCTCGCTGAACTCTTTCACAGATGTCT
TCTAAAACCCCTGACAAAGAAGGTAACAGGGGCCTTCACCCCTTGTGTCC
TGACCACAGTCCCTGCGGGCTCTACCAGCTGTCAAACAGTTCGTTCATGT
AGCCTCCTTAGAAGCTATGACTTCTGATCCTCTTTCCCCTGTGCCCCAGA
CCTCAGCAAGGAGACTGGAGTTCAGAGGTGTTAATGAACTTGACCACGGC
TGCACAGGCTATCTGTGACAGCTCACACATAAGGGTCCTCTGTAACTAGA
AGACCAGAGTCCATGCTGGTTAGCACAAAGACCAGTGAGCATCCAGGAAG
AGCATCCTCACCCACACTGTGTTCCGAGGGCCAGGGCTCTGAGATGGCAG
TAAGCTAACACCCTACACTGCCTCACAGCTCCTCTCCTGCAGCAGATTGC
ATGGGAGAAGAGCAAAGAGCAAAGGCCAGCCATTACAGAGTCTGGCCCTC
GCAAGTCAGGTGACCTGATAACTTCTCCCCCTTGTTAGCTTAGTCTGGAT
TGAAAACCCCCTTGGTAATCGAACTCTTATCTGTGTCCTTATGACGATGT
TTTCTAATTCAGATTCATCTCCGTTTCGTAAAACTTCTCCTTTCTCTGTT
TGGGAATCCCCTTTTCCTTCGTTCGTGTATCACTCGAATTTCGTTCCACA
TAATAATAAAATATAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_n08.b1 MSMg01no396_n08.b1 CHROMAT_FILE:
MSMg01no396_n08.b1 PHD_FILE: MSMg01no396_n08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:04 2005
         (243 letters)



>mm_chr7_142426186_142426828
          Length = 643

 Score =  443 bits (229), Expect = e-129
 Identities = 238/241 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaaggctaaagtctgaaagatggggccatagagttaatcctcatacaatagattagaaa 60
           ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 441 caaaggctaaagtctgaaagatggggccatagagttaatccacatagaatagattagaaa 382

                                                                       
Query: 61  gaggactcaggctgtgcctatccagtagggaatgcagctttgctggctggtcacagtata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaggactcaggctgtgcctatccagtagggaatgcagctttgctggctggtcacagtata 322

                                                                       
Query: 121 aagaccagaggggcccagtataaaataaggagtatggattcctgagggttctactgacca 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 aagaccagaggggcccagtataaaataaggagtatggattcctgagggttctacagacca 262

                                                                       
Query: 181 gatctaatgccaaagtcaaaactatagagcaaggacaagcaatggagctgcaagtcactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatctaatgccaaagtcaaaactatagagcaaggacaagcaatggagctgcaagtcactg 202

            
Query: 241 g 241
           |
Sbjct: 201 g 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no396_n08.g1 MSMg01no396_n08.g1 CHROMAT_FILE:
MSMg01no396_n08.g1 PHD_FILE: MSMg01no396_n08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:04 2005
         (339 letters)



>mm_chr7_142255469_142256207
          Length = 739

 Score =  601 bits (311), Expect = e-176
 Identities = 332/339 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctttgctcgctgaactctttcacagatgtcttctaaaacccctgacaaagaaggtaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctttgctcgctgaactctttcacagatgtcttctaaaacccctgacaaagaaggtaac 260

                                                                       
Query: 61  aggggccttcaccccttgtgtcctgaccacagtccctgcgggctctaccagctgtcaaac 120
           |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
Sbjct: 261 aggggccttcaccccttgtgtcctgaccacagtcccagcgggctctgccagctgtcaagc 320

                                                                       
Query: 121 agttcgttcatgtagcctccttagaagctatgacttctgatcctctttcccctgtgcccc 180
           ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 agttctttcatgtagcctccttagaagctatgacttctgatcctctttccccggtgcccc 380

                                                                       
Query: 181 agacctcagcaaggagactggagttcagaggtgttaatgaacttgaccacggctgcacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agacctcagcaaggagactggagttcagaggtgttaatgaacttgaccacggctgcacag 440

                                                                       
Query: 241 gctatctgtgacagctcacacataagggtcctctgtaactagaagaccagagtccatgct 300
           |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctaccagtgacagctcacacataagggtcctctgtaactagaagaccagagtccatgct 500

                                                  
Query: 301 ggttagcacaaagaccagtgagcatccaggaagagcatc 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggttagcacaaagaccagtgagcatccaggaagagcatc 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)