BAC Information

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BAC

Clone NameMSMg01-397E10
Chromosome7 (Build37)
Map Location 141,188,623 - 141,188,960
singlet/doubletsinglet
Overlap geneAdam12
Upstream geneCtbp2, LOC668747, 4930404H21Rik, LOC100043237, 2700050L05Rik, Mmp21, Uros, Bccip, Dhx32, LOC100043695, Fank1
Downstream geneA130023I24Rik, 4933400E14Rik, LOC100043248, LOC100043699, LOC668750, Dock1, B830028B13Rik, EG668693
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397E10.T7 (MSMg01no397_e10.b1)MSMg01-397E10.TJ (MSMg01no397_e10.g1)
ACCAG497654AG497655
length776780
length of high quality
(start - end)
342 (75 - 416)355 (73 - 427)
definitionCHROMAT_FILE: MSMg01no397_e10.b1 PHD_FILE: MSMg01no397_e10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:39 2005CHROMAT_FILE: MSMg01no397_e10.g1 PHD_FILE: MSMg01no397_e10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAACACAAACCGCGGA
ATTCCTTGAGTTTCCCGCACAGAATGAGACACACATTACACACATGCCAC
AGCCTACAGACACATAACAATACAACACACACACACACACACAAATGAAC
ATTACCACACACACAAACACTGAATTGCTTTACGCATCTTTGACATGGTA
TCGATGGAATCCCATTGAGCTTCAGTGTATCTCTTGGTCTGAAAAAGGAA
GGCAGTGTCTTGTTTTCATTCACTTCTCTCTGGTGACTCATTGGTTCATG
GGCTACTACCCCATCTCCAGTTCTATTCTAGGCCTTAGGGATACCGCAGT
AAATAAACTGTGTTCCTGGGAGGGGGCAATGGACAGAGGGTGGATGACAG
AAGCCATTGTGAACAGAAATGAAGCTGATGAAAAGGATAGGAGGAAGTAG
TCCAAGATGCAAAAGTGAAAGCCAGGCACATATGTTGCATGAAGCACGAA
ATATCATGCACACCACGTTAGAGCAGAGTAACCATGCTTGCCTGAAAAAG
GAACAATATAAATGTTAAAGCAAAACGACTTCCCACGCTTATACCACAAA
AACATTGGCCAAACCTTCTGTCCTAAACAAAAATTCGGGTTGTCCCTTAT
ATCCCCCTTTCTCCCCACCTTAAATCTCCCGTCGTATATATCCTCCCTCC
CCAAATATCTTAACATCATCATTAATGGCGACCCCAACTTCACCTCCCCT
CTTCAAAATATATTGCTTCCCATTAC
AATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAACACTGAGTTCTTCCAATGCCAGGCTT
TTAAAAAAATTGTCTGGAGACTTTGTTTGTGCTTCAGTTTCACTGTTTAG
TATAGATATGTTAGGCTTTTTTATGTAACCTTGGTTCAACTTTCCTCATG
TGTCTAGAAATACATCCCATTTCTTGGCTTTCCAATTTATTGAAATATTT
CAATCTTTTAAAATATTCCCTAATAGTCCTCTGAATTTTAGTGCTACTTA
CTCTCTCATCTCTAACCTTATTATTTTGAGTTTTCTATCTTCATTTGCTA
GTTAGTCTAAGAGCTTGCTGGTCTTGTATATCTTTTTGAAGAGTCATCTG
TTGTACTGCATCCGCGCTCTTTTAGTTTCCACTTCCTTACTTTTCCGCTC
TGGTTTTTTTCTTCCCTCCTGTCATTGTTTTCTTTTCCCCGCCCTTATTT
TTTCTCTTGTCTTTCTGCGCCTCTCTGCTTTTGCTCCCTTGTTTCTCTTC
CCTACCCCCTTACCTCTTGCCATCTATTCCTCCTTTAACTTTCCTTCCTC
ACTCCCCATCCTTTTTCTCCCTTCTTTTTCTCTTGTTCCCTCTCCTCCAT
TTTATTTCTTTTCTCTTTTCCCCCCTTTTTCTCTTCTCTTTTACTTTTAT
TTCTTTTCTTTTCTCCTTTTTCCTTTCCTCATTCTTCTTTCCCCTTTTCT
ACTTCCTATTCCCTTTCTTCTCTTTTCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_e10.b1 MSMg01no397_e10.b1 CHROMAT_FILE:
MSMg01no397_e10.b1 PHD_FILE: MSMg01no397_e10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:39 2005
         (342 letters)



>mm_chr7_141188416_141189157
          Length = 742

 Score =  545 bits (282), Expect = e-159
 Identities = 324/346 (93%), Gaps = 19/346 (5%)
 Strand = Plus / Minus

                                                                       
Query: 2   gagacacacattacacacatgccacagcctacagacacataacaatacaacacacacaca 61
           |||||||||||||||||||||||||||||||||||||||||||||||||      |||||
Sbjct: 545 gagacacacattacacacatgccacagcctacagacacataacaataca------acaca 492

                                                                       
Query: 62  cacacacaaatgaacat----t--acc----acacacacaaacactgaattgctttacgc 111
           |||||||||||||||||    |  |||    || ||||||||||||||||||||||||||
Sbjct: 491 cacacacaaatgaacatgtaatcaaccgcttac-cacacaaacactgaattgctttacgc 433

                                                                       
Query: 112 atctttgacatggtatcgatggaatcccattgagcttcagtgtatctcttggtctgaaaa 171
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 atctttgacatggtatcgatggaatcccattgagcttcagtgtatctcttggtctgaaaa 373

                                                                       
Query: 172 aggaaggcagtgtcttgttttcattcacttctctctggtgactcattggttcatgggcta 231
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 aggaaggcagtgtcttgttttcattcacttctctctggtgactcattggttcatgggcta 313

                                                                       
Query: 232 ctaccccatctccagt-tctattctaggccttagggataccgcagtaaataaactgtgtt 290
           |||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 312 ctaccccatctccagtgt-tattctaggccttagggataccgcaataaataaactgtgtt 254

                                                         
Query: 291 cctgggagggggcaatggacagagggtggatgacagaagccattgt 336
           |||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 253 cctgggagggggcaatggacagagagtgggtgacagaagccattgt 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)