BAC Information

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BAC

Clone NameMSMg01-397E11
Chromosome7 (Build37)
Map Location 148,629,762 - 148,629,977
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr533, Olfr534-ps1, Olfr535, Olfr536, Olfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46, Olfr61, Olfr53, Olfr539, GA_x5J8B7W3EKE-4574231-4574913, Olfr45, Olfr541, GA_x5J8B7W3EKE-4522784-4521912, Cyp2e1, Syce1, LOC100043529, BC066028, 1190003J15Rik, Scgb1c1, Odf3, Bet1l, Ric8, Sirt3, Psmd13, LOC100043546, Cox8b, Nlrp6, Athl1, Ifitm5, Ifitm2, Ifitm1, LOC665143, Ifitm3, Ifitm6, B4galnt4, Pkp3, Sigirr, Trp53i5, Ptdss2, Rnh1, LOC546015, Hras1, Lrrc56, 1600016N20Rik, Rassf7, AA673488, Irf7, Mucdhl, Sct, Drd4, Deaf1, Tmem80, Eps8l2, B230206H07Rik, Taldo1, LOC100043585, Pddc1, Cend1, Slc25a22, Lrdd
Downstream geneRplp2, Pnpla2, Efcab4a, Cd151, Polr2l, Tspan4, Chid1, Ap2a2, Muc6, LOC100039649, Muc2, Muc5ac, Muc5b, Tollip, EG623757, Brsk2, 2700078K21Rik, Dusp8, LOC100039728, EG668763, LOC100043616, EG665295, LOC100043617, Krtap5-2, LOC100039757, LOC100039767, EG665305, Krtap5-5, EG640223, LOC672428, LOC100039800, LOC100043627, LOC100043629, ENSMUSG00000038442, Krtap5-1, Krtap5-4, LOC270015, 6330512M04Rik, Ctsd, Syt8, Tnni2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397E11.T7 (MSMg01no397_e11.b1)MSMg01-397E11.TJ (MSMg01no397_e11.g1)
ACCAG497656AG497657
length760856
length of high quality
(start - end)
244 (77 - 320)216 (77 - 292)
definitionCHROMAT_FILE: MSMg01no397_e11.b1 PHD_FILE: MSMg01no397_e11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:39 2005CHROMAT_FILE: MSMg01no397_e11.g1 PHD_FILE: MSMg01no397_e11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCAGACACCATCC
GCGGAATTCTGGGATTCCTTGAGAGGGTATTAAAAGATGCCAGAGCCCCA
AGAGAGGTGGAGGCTGCTGCTCCTGGTCCCTGTTGCTGTGGTTCATCAAG
TGGTCATGAGCAAAGGAAGAGAAGAAGAAATTGGATATCGTGATAAAGAA
GATTGGACTTGCCCCCAAGGAACTCAGTGCCCCTAATCAGCAGGAAGTAG
TCTAATGAGTTCTATGCCCCCTTTCCCCTCTAACCTTTTTCTCCCACCCG
CTGTTGGGGGGCTGGAAGGGATATATTGTTAGATAGAAAAACCCAGTAAA
GTACCCAGAAAGTACAGTTACAGACATCTGTGGCTTCCCATCTATCAGTT
TTACAAGGAGTCTTCCAAGCTGCATTTATAATGTCCTTGGTCTTCCTACC
TGCTTCATATGTGTGTATGGTGTGTAAGTATACATACATGCATGTTTTAC
ATGTGTGTGAACACACTTGTGAGTGTGAATACTTGTGGGTGTCTGTACAT
ATGGAGATCCCAGGCTGATGTCAGGAATTGCCCTCCATCACACTTCCGCC
TTGTTCACTGAATCAAGGGTTCCTGGTCATTCCCAAAACGTGCCACCGTG
GGTTGTTTTTATTTCCCAACTTGCTCTGGGAAAATTCCGCCTTTGGTTTA
ACCGGCCGGATTCCCACCCAATCCCCCTGTATTTTTTTGGTTTTCTCGGA
ACCTCCTTTT
CTACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTACTGGCTAGCCCGGAGGGGCGG
AGCCCGACGGGTGGCCCGCCCGGAAGCGCGCCGGCGGGAAGGCAGCACAG
AGCGCGCCTAGACTGGCGGGGAGATCAGCGTGGCAGGTACTCAATGGGAG
GCGGGAAGTTTGCTCCAGAGGCGGGACCAAAGCGACTCCTCACCTACCGA
GACCCCCTCTGCTTTCCCCATTTGACGGAGGTGGGAATTGGGAATTGTGT
TCCTACAGCGCCTACTTTTAATCTTTTCACGGGACCCCCCCCCCCCCACC
CCCATACGACTTCTCTGCCCCCCCCTCTTTTCGTTTTACTGCCCCCCCCC
CTCCTCCCTTTTCCTTTTCCCCCCCCTCCCCTTCTTCTTTCTGCTCCTTA
CCCCTTCTCTCTTTTTTTTCCTTCCTATTCCTTTTCTTTTCCCTTCTCCA
CCTCCTCTTTTTCCTCTTCCCCATCTTTTATTCCCGCTCTGCCCTCTCCT
TCTTCTTTTCCCTCCCATCCTCCTCCTACCTTTCTTAGCTCCCTTCTCCC
ATCTTTCTCTTTTTTTTTCTCCTTTTCTTATCCTTCTCTCCCTCTTCCCT
CTTACTCCTCTCTCTTCTTCTTTTTTCTTCTCCTTCGCCTTACCTTCCCC
ACTTTTTTTTTCTCTTCTTCCCCCCCCCTTTTCTTTTTCTTTCTTTTTTT
TTCCCTTCTTTTTCTCTTCCTCCCTCCTACTTCTACGTCGCTTACCCCCC
TCCCCCTCTCTCTTTTTTTTCTTTACTCCGCTCCCCTCTATCTTTATTCT
CTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_e11.g1 MSMg01no397_e11.g1 CHROMAT_FILE:
MSMg01no397_e11.g1 PHD_FILE: MSMg01no397_e11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:39 2005
         (216 letters)



>mm_chr7_148629562_148630177
          Length = 616

 Score =  402 bits (208), Expect = e-117
 Identities = 214/216 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctactggctagcccggaggggcggagcccgacgggtggcccgcccggaagcgcgccggcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ctactggctagcccggaggggcggagcccgacgggtggcccgcccggaagcgcgccggcg 357

                                                                       
Query: 61  ggaaggcagcacagagcgcgcctagactggcggggagatcagcgtggcaggtactcaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ggaaggcagcacagagcgcgcctagactggcggggagatcagcgtggcaggtactcaatg 297

                                                                       
Query: 121 ggaggcgggaagtttgctccagaggcgggaccaaagcgactcctcacctaccgagacccc 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 296 ggaggcgggaagtttgctccagaggcgggaccaaagcgattcctcacctaccgagacccc 237

                                               
Query: 181 ctctgctttccccatttgacggaggtgggaattggg 216
           ||||||||||||||||||||||||||| ||||||||
Sbjct: 236 ctctgctttccccatttgacggaggtgtgaattggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 616
Length adjustment: 9
Effective length of query: 207
Effective length of database: 607
Effective search space:   125649
Effective search space used:   125649
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)