BAC Information

Click to search

BAC

Clone NameMSMg01-397J07
Chromosome7 (Build37)
Map Location 19,316,555 - 19,316,799
singlet/doubletsinglet
Overlap genenone
Upstream genePsg30, Ppia-ps7_184.1, Ceacam14, EG381852, Ceacam11, Ceacam13, LOC384560, Ceacam12, Igfl3, LOC671190, Mill1, Psg18, LOC546936, Psg28, LOC666831, EG574429, EG232930, Psg25, EG545925, Psg23, Psg21, EG434540, BC050099
Downstream geneLOC666863, Sycp1-ps1, Psg19, Psg17, Mill2, Pglyrp1, C530028I08Rik, Nova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397J07.T7 (MSMg01no397_j07.b1)MSMg01-397J07.TJ (MSMg01no397_j07.g1)
ACCAG497887AG497888
length771782
length of high quality
(start - end)		246 (74 - 319)289 (73 - 361)
definitionCHROMAT_FILE: MSMg01no397_j07.b1 PHD_FILE: MSMg01no397_j07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:03 2005CHROMAT_FILE: MSMg01no397_j07.g1 PHD_FILE: MSMg01no397_j07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCTATTTGCGGCGCTAAAAGAATCACTACATTCAGAAAATCCGCGGAAN
NCAGCTTCAATACCACCACCAGTCTCCCACTGATGGGCCCCTACCCATGC
ACCGGGGACACCACAAAGACTGTTACTGTTACTGTTTTCATGAAGCTTCA
GGAAGTCGGGTGATAGAGACTTCAGGTCCCAAGAGAAAGGGGGGATGAGA
TGCCAAAGCTTTTAAGAAGAGACTCCATTTTAGAGAACCTAAACTAAGTT
TGATCTCAGGTAAACTAACAAGCTGGTATATAGCATGGTCTCTAAATTGC
CCCCCAACAAAACCTGAGTCTATTTTCTGTCTCTAGGCTAATCTCCAACA
ACACAAGGGTCTCCAGGTCATTCCCCCAAACATGTATACACCCCAGGATA
CAAACTGATCCCTTGCCCACCAACCACCAATGGGATGTGGAGCAGAAGTT
AAGTTTCTGATATGACTCTCAAAACCAGCCAATTATGTTAAAGGCCACAA
CATCTCCTCATTTACATGCTTGCGCATGTATTGCGGATTACTCTGAGAAT
TGTCCCCCATACATATCCGGTTCTCCCCTTCTTACAAAAATTTTTTTGCA
CGGATGCGTGTTTTATGTGGGACCCTGGTCCCTCACCGTTCCTTCCACTT
ATCCTCTCCGGTCTGCAATTTGTTTTTCTTTACGGCTCCTTGCTTTGGGT
TTTTCCTCGCCCTTCCCCTCTTTTTATTCCTTTGTCCTTTATCTTTACAT
TCTCCTTCTATATATTGTTTG

ACCGATTTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGACTGTTATGTCTCCACATACTGGAGC
ATCTTTGGAGAGCCACCCTGTCATGGTTAGGAACATCGGTCTTCTGACCA
TGGTGGCCAATGTGACTGACTTTTAAGAGGGACAGCTGAGACTTTTCTTT
CCCTCCTCAGTTCCTGTCTGCTCAGAGTTTCCTGCTGCCGAGCCTCTGTC
CCTCACTGCACCTTCTGCACCATGACTACAAACAGAAACTCAATTCTTCT
CTAGACATCTTCAAATCATAGTACTTTGGGCTTCTGAGTTTCCCTTCCCA
CACACAATCAGATAGTTGGAACACTTACCTGTGAGGAGAACCCTTTGCCA
TGAGGTACACCCCTTGCTGAATAGTTCAGAGGACACCTTCCATATCTCTT
CTCACTGCACTGGCCCCTTCTCTGATGAGAGGACCTTCTTTTTCTGTTTC
GTACTCTGGCCTCTTGCTGTCCTTTCTTTCTCCCGATTTGAGAGTTCCCT
TTCCTCCCGTTTACTCCTCCCATTCCCCATCGACCTGTTGTTGCCCACTC
TCCCAGCTCTCTTATCTCATCTTCTCCAACCCTTTTCTTCCCTATTTTCC
TTCTACCATCTTGCTCTTCTCCTTTCCTCCTTTTTCTTTCCTTTCCCTAT
ACATTTTTTTTTATTTCCTTTTTTCTTCCCCCCTTTCCATTCTTCTCCTC
TTTTACTCTTTTTTCCCTCACTCTATTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_j07.b1 MSMg01no397_j07.b1 CHROMAT_FILE:
MSMg01no397_j07.b1 PHD_FILE: MSMg01no397_j07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:03 2005
         (246 letters)



>mm_chr7_19316478_19317123
          Length = 646

 Score =  437 bits (226), Expect = e-127
 Identities = 241/246 (97%), Gaps = 2/246 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcccactgatgggcccctacccatgcacc-ggggacaccacaaagactgttactgttac 59
           |||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||
Sbjct: 322 ctcccactgatgggcccccacccatgc-cctggggacaccacaaagactgttactgttac 264

                                                                       
Query: 60  tgttttcatgaagcttcaggaagtcgggtgatagagacttcaggtcccaagagaaagggg 119
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 263 tgttttcatgaagcttcaggaagtcaggtgatagagacttcaggtcccaagagaaagggg 204

                                                                       
Query: 120 ggatgagatgccaaagcttttaagaagagactccattttagagaacctaaactaagtttg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggatgagatgccaaagcttttaagaagagactccattttagagaacctaaactaagtttg 144

                                                                       
Query: 180 atctcaggtaaactaacaagctggtatatagcatggtctctaaattgccccccaacaaaa 239
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 aactcaggtaaactaacaagctggtatatagcatggtctctaaattgccccccaacaaaa 84

                 
Query: 240 cctgag 245
           ||||||
Sbjct: 83  cctgag 78


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |