Query= MSMg01no397_o13.b1 MSMg01no397_o13.b1 CHROMAT_FILE:
MSMg01no397_o13.b1 PHD_FILE: MSMg01no397_o13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:29 2005
(245 letters)
>mm_chr7_116453641_116454285
Length = 645
Score = 427 bits (221), Expect = e-124
Identities = 239/245 (97%)
Strand = Plus / Plus
Query: 1 cacactctgcttttaaatgttaataaaaatttgaaagactatttttaacttttagcataa 60
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 201 cacactctgcttttaaatgttaataaaaatttgaaagactataagtaatttttagcataa 260
Query: 61 agtttaacacaattaggaaaagggtatattcagttgtaaaaaccagtgaaacaatatgta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtttaacacaattaggaaaagggtatattcagttgtaaaaaccagtgaaacaatatgta 320
Query: 121 tgagaaatatgtctttttaaaggtgtaaaacttcagaaaaattccccaatattaagttct 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgagaaatatgtctttttaaaggtgtaaaacttcagaaaaattccccaatattaagttcc 380
Query: 181 tccccatatatcacagacaagcctaagcaagggaaagttccttagaagatactgcaggca 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 tccccatatatcacagacaagcctaagcaagggaaagttccttagaagacactgcaggca 440
Query: 241 aaatg 245
|||||
Sbjct: 441 aaatg 445
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no397_o13.g1 MSMg01no397_o13.g1 CHROMAT_FILE:
MSMg01no397_o13.g1 PHD_FILE: MSMg01no397_o13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:29 2005
(245 letters)
>mm_chr7_116601887_116602531
Length = 645
Score = 344 bits (178), Expect = 2e-99
Identities = 243/302 (80%), Gaps = 57/302 (18%)
Strand = Plus / Minus
Query: 1 agacatcaggtaatggctcttggccaactttctcaccctcagcttcctgtcctgagaggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 agacatcaggtaatggctcttggccaactttctcaccctcagcttcctgtcctgagaggt 318
Query: 61 tggcacaggaagtaatcctgtacatgaactagaagcagaattttgtctatacctattgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tggcacaggaagtaatcctgtacatgaactagaagcagaattttgtctatacctattgtc 258
Query: 121 acctcctgcagggcctcaagtgggtggctgtggttgggtgcctagaac------------ 168
|||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 257 acctcctgcaaggcctcaagtgggtggctgtggttgggtgcctagaacgggggtgggtgc 198
Query: 169 ---------------------------------------------gggggtgggacattt 183
|||||||||||| ||
Sbjct: 197 ttagaaaagggttgagtgcctagaatggggttgggtgcctagaatgggggtgggacagtt 138
Query: 184 ccaggcatgactaggcatgcactctgggtaatcgtccttgctcttcacggagccctcttc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 ccaggcatgactaggcatgcactctgggtaatcgtccttgctcttcacggagccctcttc 78
Query: 244 ta 245
||
Sbjct: 77 ta 76
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
