BAC Information

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BAC

Clone NameMSMg01-397P13
Chromosome7 (Build37)
Map Location 121,500,054 - 121,500,296
singlet/doubletsinglet
Overlap gene4933406I18Rik
Upstream geneBtbd10, Pth, LOC100042736, Mlstd2, EG434228, Spon1, Rras2, LOC668451, Copb1, Psma1
Downstream genePde3b, Cyp2r1, Calca, LOC100043295, Calcb, Insc, EG627967, LOC668472
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397P13.T7 (MSMg01no397_p13.b1)MSMg01-397P13.TJ (MSMg01no397_p13.g1)
ACCAG498185AG498186
length847811
length of high quality
(start - end)
238 (66 - 303)247 (68 - 314)
definitionCHROMAT_FILE: MSMg01no397_p13.b1 PHD_FILE: MSMg01no397_p13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:34 2005CHROMAT_FILE: MSMg01no397_p13.g1 PHD_FILE: MSMg01no397_p13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTTGCGGCGCTAAACGACTCACATTTTCCGACCTCCGCGGAATTCTGTG
TATTTACACCAACATTTTTTAGTTGAGTTATCGGGTTTGTTAATGTCTAG
TTTCTTGAGTATTCCAATATATATTTTGGATGTCACCCTCTGTCTGATAT
GGAGTTAGTGAAACTCTTTTCTCATTTTGCAGGTTGCCATTTTGTCCTTT
GACTGTGTCATTTGCCTTGCAGAAGCTTTTCACTTTCATGAGGTTTCTCT
TATTATCTTAGTACCTATGCTGTTGGTGTTTTTTTCAGGAAATAGTCTCC
TGACCCAATGTANTTAAATTTATTCCCCAGACTCTCTTCTATCAGATTTA
TTGTTTCTGCCCCTACATCGAGGTTTTTGTTCCTCTTGGACTTGCACTTT
TTGTGTCCCCCCCCCCCCCCCCCTTTTTCTCCTTCTTTCCCTTCCGCCTG
GCCTTCCCCCATCCTTTCTATTTTTCTCCTTACATTGCACCCTGCTTCTC
CTTTTTTTTCCTTCCGCTTGCTCTCCTTCTATAAGTAACCCCTACCTCTT
CCTTTTCTTTACGATCTTTCGTCTCTCCCCCTTATTTTCTTCTTCTTCCC
CCCTATTCTCTGCTTTTCTTTTCCCTTTGTTCCCAACCCCTTTTTTTTCC
CCTTCCTTCTTCCTCTCTTTTCCTTTTTTCCATATATATCCCCCTCTTCT
TTTTTTTTTTTTCTCTTTCTTTCTCCACTTCTCCCTCCCCTTTTTTATTT
TCCTCAACTTCCTCTATTTTCTCTTATTTCCCCCCTTTCCCTTCTTTTTT
TCTCCTCTACTCTCTTACCTCCCCCCTCTTCTTCTCTTCTCTCCTTC
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTAAGTGCATCCTTAAAGCTCAAAGGAAGGGTGT
GGTTTTGACTCAAACTTTGCCTTATTGGCCAACCTCAGGGAGTCTGGGTT
GAGTTAGAGGGAATGTAACAAAGCCTGACAGTAGACAAGTCTGATGTGGT
TTAAAGTTTCATTATGAAACTTCTGTGTACTTCTGCTTTTCACCCTTTTG
TGTCATAGGCAAACAACTAAAGCATTCGTTTCAGTTTTTGCTGACCATCT
GTTTGAAATATCTTTTTTCTTCTTAATTCAAATAGCCTGCATTGTCTACT
AGTAGTTTATCATGCTGAAACTGAATAATTTATTCCTAATCCACTTTATA
GCTTTTTTTTCCCCCCCCCATTTGTGATATATTTCTTTATCCATCTTCTA
TCTTTCCCCCTTTCACTTTTTTCTTTGTTGTCTCTTCGCTTTTCCTCATC
ATTTCTATAATTCTCCTATCTTACTTTCTGCCCCCCCTTATTTCTCCATC
TTTCCAGACCCTTTCTCCCCTTTCTCTTTACCTCTTTTTTCCCTTTTCTA
TGATCACCTCTTACTCTATTCTCTCCCTTTCTTGTGCATCCCTCTTTCAA
CAACTCCTCTCAAACCAACTCCTTCCTTTTTCTCTTTTATTTCCACTCAC
CCGTCCTCTTTCACTCTTTAACCCCCTTTTGCTATCTCTTTTGTCCTTTT
TCCTCATATGTCCCACCCTGCTTCTCTCTTCTTTTGTTTTCTTTTCCATT
CTCTTTATTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_p13.g1 MSMg01no397_p13.g1 CHROMAT_FILE:
MSMg01no397_p13.g1 PHD_FILE: MSMg01no397_p13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:34 2005
         (247 letters)



>mm_chr7_121499854_121500500
          Length = 647

 Score =  455 bits (235), Expect = e-132
 Identities = 241/243 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taagtgcatccttaaagctcaaaggaagggtgtggttttgactcaaactttgccttattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taagtgcatccttaaagctcaaaggaagggtgtggttttgactcaaactttgccttattg 260

                                                                       
Query: 61  gccaacctcagggagtctgggttgagttagagggaatgtaacaaagcctgacagtagaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccaacctcagggagtctgggttgagttagagggaatgtaacaaagcctgacagtagaca 320

                                                                       
Query: 121 agtctgatgtggtttaaagtttcattatgaaacttctgtgtacttctgcttttcaccctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 321 agtctgatgtggtttaaagtttcattatgaaacttctgtgtacttctgcttttcacccag 380

                                                                       
Query: 181 ttgtgtcataggcaaacaactaaagcattcgtttcagtttttgctgaccatctgtttgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgtgtcataggcaaacaactaaagcattcgtttcagtttttgctgaccatctgtttgaa 440

              
Query: 241 ata 243
           |||
Sbjct: 441 ata 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)