BAC Information

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BAC

Clone NameMSMg01-398E17
Chromosome7 (Build37)
Map Location 87,237,488 - 87,414,827
singlet/doubletdoublet
Overlap geneZfp710, Idh2, Sema4b, Cib1, D330012F22Rik, LOC100042374, LOC100042379, Ttll13, Ngrn, Vps33b
Upstream geneAcan, Hapln3, Mfge8, Abhd2, Rlbp1, BC025462, Polg, AI854517, Rhcg, 5730590G19Rik, Plin, Pex11a, EG626359, EG665900, Mesp1, Mesp2, Anpep, Ap3s2, 2610034B18Rik
Downstream genePrc1, Rccd1, Unc45a, Hddc3, Man2a2, Fes, Furin, LOC384647, Blm, Crtc3, Iqgap1, LOC100042402, Zscan2, Wdr73, Nmb, Sec11a, Zfp592, Alpk3, Slc28a1, EG623286, LOC100043130, Pde8a, EG636544
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398E17.T7 (MSMg01no398_e17.b1)MSMg01-398E17.TJ (MSMg01no398_e17.g1)
ACCAG498429AG498430
length769776
length of high quality
(start - end)		462 (51 - 512)239 (79 - 317)
definitionCHROMAT_FILE: MSMg01no398_e17.b1 PHD_FILE: MSMg01no398_e17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:59 2005CHROMAT_FILE: MSMg01no398_e17.g1 PHD_FILE: MSMg01no398_e17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,237,488 - 87,237,945)(87,414,590 - 87,414,827)
sequence
NNNTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCACTCTACCTTATTTTGACATGTATACAAACCAACTGTTT
AGAGATTCCTCTTGTGCAGAGCCCTACTGTGTTTTTATGTTCCTGTTTAA
AAAGAGAAGTTTACTTAGCAATAATTATAAATAAATGAATATTCTTTAGC
GAGGTGACTGTACGTGCTTCTTGGTGCTCTTGGAGGCCCTTCCCCCCAAG
GAGGTCCCAACAAGGCTCCCTAGTCACATGCCAGACAGCATCCCCCTCTG
GAACTACAAGACAATCTCAGCCACCTGACCTGCCAGAGAGTTGGGGTGTG
GGTGGAGGAGAACATGCTCTGAGTCCCAAGGGCAGGTTTTAGGTCTCTGT
AGCCCGGATCTACCTGTGAAGGCCTGGGACAACAGATGAGTTCTCCCACA
CACAGCTTCTTTTTCCCGGTTGTTTTGAGACTTTTTACAGCAGGCTCACA
CTGTCTACCTGTGCCTGGCCTAGAACGCAACCATCTTCCTGTCTCAGCTT
CCTGAAGCAAGACTACACGTATGTGTGTACCCCTGGGCTTTTTCGATTTC
CCGCCTCCCCAGTGGTGGGATTTTCGGGCTTGACCGGGCATCCCCTGAAT
TGTTTTCCAAATATTTCCCACCCTCTTGGTCTGGCAAACAACATACTCTT
TGGCTTTAAAGTAATAAACATTTGGTGCTCCTTTCCTAAAAATCCTTGTT
TCCATTTCTTTCCCCCTCG

NNCCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCTGTTCTGCAAAGGCCGGC
GACAGCCCAAGGTGTTACTGCAGGCTGTTACCCCGCTTGCCTGGGCTCTG
GATCCCAGGACCCCCAAGGGGCCCTCGCTCCTCTGCCGTACTCGACGGAT
GAATGACCGACCACCTCCCGGACGGACGGCCACAGGCTCAGGCGACTCTC
CTTGGAGACCTACAGTCACTGGTCCCGCCCGAGTCCACTCAGCCTGTCAG
CAGGATTCCCAACGACTTCTTTTCACTCGGCAGCGTGCCGGCGAACCCCG
CCTCCTACCCAGAGAAAAGCCACTTCCTAGACATCCCGGAAGTCCGGGTC
TCCCAGTTAGCGATTACAGCACTAGAAGGTGACGGCGGCCGCGAAGGTAC
ATTTGAAAACGGGAGTGATCCTTTTCCCATTCACAGGTTTACTTTCCTGT
GAATGTGAACCGTCGTTGTGTGTTTTGAAACCCATTCTGCCAAATCACAC
GCGGTGTGTCTTGGTGCTTCCCCCCTCTTTCTCTTTTTTCCTCCTTTTTC
CTCTCCCTTTCTTTACCCTCCTTCCCCCCTTTTTTTCCCTTTTCCCTTCC
TTTCTTTTTCTCCCCCCTCTTACCCCCCTTCCTCCTTCTTTTCCCTCCTC
CTTTGCTCCTCTTTACTCTGCTCTTCCTTCTCTTTCTCCCCCTTCCTTTA
CTTTTTTTTTTCCCCCCTTTCCACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_e17.b1 MSMg01no398_e17.b1 CHROMAT_FILE:
MSMg01no398_e17.b1 PHD_FILE: MSMg01no398_e17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:59 2005
         (462 letters)



>mm_chr7_87237284_87238145
          Length = 862

 Score =  862 bits (446), Expect = 0.0
 Identities = 455/458 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccactctaccttattttgacatgtatacaaaccaactgtttagagattcctcttg 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccactctaacttattttgacatgtatacaaaccaactgtttagagattcctcttg 264

                                                                       
Query: 65  tgcagagccctactgtgtttttatgttcctgtttaaaaagagaagtttacttagcaataa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgcagagccctactgtgtttttatgttcctgtttaaaaagagaagtttacttagcaataa 324

                                                                       
Query: 125 ttataaataaatgaatattctttagcgaggtgactgtacgtgcttcttggtgctcttgga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttataaataaatgaatattctttagcgaggtgactgtacgtgcttcttggtgctcttgga 384

                                                                       
Query: 185 ggcccttccccccaaggaggtcccaacaaggctccctagtcacatgccagacagcatccc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggcccttccccccaaggaggtcccaacaaggctccctagtcacatgccagacagcatccc 444

                                                                       
Query: 245 cctctggaactacaagacaatctcagccacctgacctgccagagagttggggtgtgggtg 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 445 cctctggaactacaagacaatctcagccacctgacctgccagagagttggggggtgggtg 504

                                                                       
Query: 305 gaggagaacatgctctgagtcccaagggcaggttttaggtctctgtagcccggatctacc 364
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gaggagaacatgctccgagtcccaagggcaggttttaggtctctgtagcccggatctacc 564

                                                                       
Query: 365 tgtgaaggcctgggacaacagatgagttctcccacacacagcttctttttcccggttgtt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgtgaaggcctgggacaacagatgagttctcccacacacagcttctttttcccggttgtt 624

                                                 
Query: 425 ttgagactttttacagcaggctcacactgtctacctgt 462
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttgagactttttacagcaggctcacactgtctacctgt 662


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no398_e17.g1 MSMg01no398_e17.g1 CHROMAT_FILE:
MSMg01no398_e17.g1 PHD_FILE: MSMg01no398_e17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:59 2005
         (239 letters)



>mm_chr7_87414390_87415028
          Length = 639

 Score =  445 bits (230), Expect = e-129
 Identities = 236/238 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccctgttctgcaaaggccggcgacagcccaaggtgttactgcaggctgttaccccgctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 438 tccctgttctgcaaaggccggcgacagcccaaggtgttactgcaggctggtaccccgctt 379

                                                                       
Query: 61  gcctgggctctggatcccaggacccccaaggggccctcgctcctctgccgtactcgacgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gcctgggctctggatcccaggacccccaaggggccctcgctcctctgccgtactcgacgg 319

                                                                       
Query: 121 atgaatgaccgaccacctcccggacggacggccacaggctcaggcgactctccttggaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 atgaatgaccgaccacctcccggacggacggccacaggctcaggcgactctccttggaga 259

                                                                     
Query: 181 cctacagtcactggtcccgcccgagtccactcagcctgtcagcaggattcccaacgac 238
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 cctatagtcactggtcccgcccgagtccactcagcctgtcagcaggattcccaacgac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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