BAC Information

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BAC

Clone NameMSMg01-398F20
Chromosome7 (Build37)
Map Location 109,309,569 - 109,310,021
singlet/doubletsinglet
Overlap geneNup98
Upstream geneFchsd2, Atg16l2, Stard10, Centd2, Pde2a, Art2a, EG630138, Art2b, Clpb, Phox2a, Inppl1, Folr2, Folr1, 3200002M19Rik, F930017I19Rik, 2400001E08Rik, Lrrc51, LOC667222, Numa1, Il18bp, Rnf121, Trpc2, Art5, Art1, Chrna10
Downstream geneFrag1, Rhog, Stim1, Rrm1, Olfr543, Olfr544, Olfr545, LOC667284, Olfr547, Olfr548-ps1, Olfr549, Trim21, LOC384699, Olfr550, Olfr551, Olfr552, Olfr553, Olfr554, LOC100040840, Olfr555, Olfr556, Trim68, Olfr557, Olfr558, Olfr33, Olfr559, Olfr78, Olfr560, Olfr561, Olfr562-ps1, Olfr563-ps1, Olfr564, Olfr565-ps1, Olfr566, GA_x5J8B7W5P47-379997-380552, Olfr567-ps1, Olfr568, Olfr569, Olfr570, Olfr571, Olfr572, Olfr573-ps1, Olfr574, Olfr575, Olfr576, Olfr577, Olfr578, Olfr1527-ps1, Olfr579-ps1, Olfr580-ps1, Olfr581-ps1, Olfr582, Olfr583, Olfr584, Olfr585, Olfr586, Olfr587-ps1, Olfr588-ps1, Olfr589
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398F20.T7 (MSMg01no398_f20.b1)MSMg01-398F20.TJ (MSMg01no398_f20.g1)
ACCAG498483AG498484
length753748
length of high quality
(start - end)		461 (77 - 537)453 (81 - 533)
definitionCHROMAT_FILE: MSMg01no398_f20.b1 PHD_FILE: MSMg01no398_f20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:04 2005CHROMAT_FILE: MSMg01no398_f20.g1 PHD_FILE: MSMg01no398_f20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGAT
CCGCGGAATTCTCAAGTGTCCAATACCAAAGGGCTGAGAAGCACCTTAAA
AAATGTTCAACATCCTAAATCATCAGGGAAATGCAAATCAAAACAACCTT
GAGATTCCACCTCACTCCAGTCAGAATGGCTAAAATCAAAAATTCAGGTG
ACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAACACTCCTCCATTGC
TGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCAATT
CCTCAGAAAATTGGACATAGTACTATCTAGGAAGATCCAGCAATACCTCT
CCTGGGCATATACCCAGATGTTCCAACTGGTAATAAGGACACATGCTCCA
CTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCC
AGATGTCCCTCATCAGAGGAATGGATACAGAAAATGTGGTTTATTTACAC
AATGGAGTACTATTCCGCTATTAAAAACAATGAAATTCTTCGGCAAATGG
ATGCTTCTGGAAAATATCGTCCTGAGTGAGGTATCCCAATCACAAAAGAA
CTGACATGGATATGCACTCACTGATAAATTGATATTACCCCCGAAATTAA
AATACCCCAGATACAATTTGCCAAACCCCTAAAATCTCGAAAATGGAAAA
CCACGGGGGGAAACTTCCTTTCTCCCTTTAAATAAGAAAAAATACCCCCG
GAG

NCCCCCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTAAACCTCAAAAAAGATT
ATAGATTTCTCTATATAGTTTTGTTTGCCTGTAACTTGCTATATAGAGCA
GGATGGCCTTGAACTCTCACACTTACCTTCGCCTCTCAAGTGTGAGGATT
AAAGGCATATACCACCATGCTTGGCTTTCACAGCTTTAATCTCCAAGTTG
AAGCCATACTAAGTTAACCAAATTTCAAATTTCATCTTCTCTTTGAAGTA
CCAGCCACTTAAGCCAAGGATTTTTATGCCTACATCACATGTGTACAGGA
AATGTGGACTTTGTGCCTGCCTGGTTTTTTGATTATTAAGACTAGTCTAT
AGTATCTTTCTATAGAACTGCCATTTATTTATATTTACTTACCCATCTTT
CAAGGTTCCACTTCAACTAACTTATCGAACATCTTTCTAAAAATTTTATT
TCACTCAGGCAGTGATAGTACATGCCTTTAATCCCAGCACTCTGGAGGCA
GAGGCCGGCCGATTTCTGAACTACCGGCTAGCCTGCTCTACAAAGTGAAT
TTTCGTACTGATAACGTTACTCCAACCTTGTCTCCAAAATATATCCCCCT
ATAATTCTAAAAAATAACTTGTTAATATGCATTATCTGTGCGCCATCTGA
TTTCTCTTCTCTCCCTTCTTACGCCCTCTCTAGCCGTCCGTCCCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_f20.g1 MSMg01no398_f20.g1 CHROMAT_FILE:
MSMg01no398_f20.g1 PHD_FILE: MSMg01no398_f20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:04 2005
         (453 letters)



>mm_chr7_109309369_109310221
          Length = 853

 Score =  793 bits (410), Expect = 0.0
 Identities = 442/458 (96%), Gaps = 10/458 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctaaacctcaaaaaagattatagatttctctatatagttttgtttgcctgtaacttgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctaaacctcaaaaaagattatagatttctctatatagttttgtttgcctgtaacttgct 260

                                                                       
Query: 61  atatagagcaggatggccttgaactctcacacttaccttcgcctctcaagtgtgaggatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 atatagagcaggatggccttgaactctcacacttaccttcgcctctcaagtgtgacgatt 320

                                                                       
Query: 121 aaaggcatataccaccatgcttggctttcacagctttaatctccaagttgaagccatact 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 aaaggcatataccaccatgcttggctttcacatctttaatctccaagttgaagccatact 380

                                                                       
Query: 181 aagttaaccaaatttcaaatttcatcttctctttgaagtaccagccacttaagccaagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagttaaccaaatttcaaatttcatcttctctttgaagtaccagccacttaagccaagga 440

                                                                       
Query: 241 ttttt-----atgcctacatcacatgtgtacaggaaatgtggactttgtgcctgcctggt 295
                     ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 -----cacgaatgcctacatcacatgtgtacaggaaatgtggactctgtgcctgcctggt 495

                                                                       
Query: 296 tttttgattattaagactagtctatagtatctttctatagaactgccatttatttatatt 355
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 496 tttttgattattaagactagtctatagtatctttctatagaactggtatttatttatatt 555

                                                                       
Query: 356 tacttacccatctttcaaggttccacttcaactaacttatcgaacatctttctaaaaatt 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tacttacccatctttcaaggttccacttcaactaacttatcgaacatctttctaaaaatt 615

                                                 
Query: 416 ttatttcactcaggcagtgatagtacatgcctttaatc 453
           ||||||||||||||||||||| ||||||||||||||||
Sbjct: 616 ttatttcactcaggcagtgatggtacatgcctttaatc 653


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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