BAC Information

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BAC

Clone NameMSMg01-398I04
Chromosome7 (Build37)
Map Location 109,663,377 - 109,663,709
singlet/doubletsinglet
Overlap geneLOC667284
Upstream geneArt2a, EG630138, Art2b, Clpb, Phox2a, Inppl1, Folr2, Folr1, 3200002M19Rik, F930017I19Rik, 2400001E08Rik, Lrrc51, LOC667222, Numa1, Il18bp, Rnf121, Trpc2, Art5, Art1, Chrna10, Nup98, Frag1, Rhog, Stim1, Rrm1, Olfr543, Olfr544, Olfr545
Downstream geneOlfr547, Olfr548-ps1, Olfr549, Trim21, LOC384699, Olfr550, Olfr551, Olfr552, Olfr553, Olfr554, LOC100040840, Olfr555, Olfr556, Trim68, Olfr557, Olfr558, Olfr33, Olfr559, Olfr78, Olfr560, Olfr561, Olfr562-ps1, Olfr563-ps1, Olfr564, Olfr565-ps1, Olfr566, GA_x5J8B7W5P47-379997-380552, Olfr567-ps1, Olfr568, Olfr569, Olfr570, Olfr571, Olfr572, Olfr573-ps1, Olfr574, Olfr575, Olfr576, Olfr577, Olfr578, Olfr1527-ps1, Olfr579-ps1, Olfr580-ps1, Olfr581-ps1, Olfr582, Olfr583, Olfr584, Olfr585, Olfr586, Olfr587-ps1, Olfr588-ps1, Olfr589, Olfr590-ps1, Olfr591, Olfr592, Olfr593, Olfr594, Olfr595-ps1, Usp17, Dub2a, LOC100041187, Olfr597, GA_x5J8B7TU1BB-380-666, Olfr598, Olfr599, Olfr600, Olfr601, Olfr602-ps1, Olfr604, Olfr596-ps1, Dub2, Olfr605, Olfr606, EG546989, Olfr608, Olfr609, Olfr610
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398I04.T7 (MSMg01no398_i04.b1)MSMg01-398I04.TJ (MSMg01no398_i04.g1)
ACCAG498595AG498596
length756751
length of high quality
(start - end)		115 (123 - 237)333 (81 - 413)
definitionCHROMAT_FILE: MSMg01no398_i04.b1 PHD_FILE: MSMg01no398_i04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:15 2005CHROMAT_FILE: MSMg01no398_i04.g1 PHD_FILE: MSMg01no398_i04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATAATTTGCGGCCGCAAACGACTCACATTTCGAACNCGTCCGCGGAA
NNCCACAATACCAAAAAAGGGGGGGACAGGAAAAGNCAGCAGNCAGGGCC
CTCGCAACTCTTTAGCACTGAGGTCTCAGTCCCATGTAGGACAGCTTGCT
GCTGCATCCCTCATCTGGCTTCTACTTGTTCTTGGAACACAGGCACATGC
TCACAAATATTTAAAAATTATAAAAATAATTAAGAAACCCAACAACTGCC
TAAATGGGGCAAGGTGACTAAAGCCTCTAATACCATCAATTGGGAGGTAG
AGACACAATGATTTTTTTTTTTTTAAGGCCAGCCTCAGCTACATAACAAG
ATTGTTTCTGGCCTGCCCTTGCTTACATGTGATTCTGTGTTCTGAGTACC
ATTTTCTAGCCCCCCATCATACTGTTAATCCGACCCCCAGCTTTTTTCCT
CGTCTCGCTTGTTCTAACTCTCGCCTCTACACTAAAAGTAAACCGCTCGA
TCTTTTCAGCACCTTCCTCTCCTGAATTGTCTTGTCCTGTCCCCGACTTT
ACCCACCTTACCCCCCCTGTTCCTTCTATCTTCCCCACTATCCCCCCTTT
CCCCCCCCCCTTCTCTACCTTTTCTTTCCCCACCCCCTTCCCCCTTTTCA
CCCCCCCCCCCCCATTTTCACCTTCCTTTCCTTATCCCTTTTTCGCCCTA
TTTTCACATCTTCCCCTACTTTATATCTAACATAAATTCTCCCTTTTTCT
CCATTN

CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAATTTGNAGACCAGGCTGGTCTTGAAC
ACAGAGATTCACCTGTCTCTGACTCCTTCCTGAGTGCTGGAATTAAATGT
GTGTGCTAGTATTCTCATCTGGGAAAATAAACATTTTAAGTGATCGATAT
GTCTACATGCAGAGTTGAGCAGGGTCTGACTCACAAGTGTTAAGAGAGTA
TTGGGACAGACACAGTATAAAGACAGAAGTGGCCAGCTTTTATCTGCCTC
AGTTATCCATCAGATTTTNATCGTTTGCAGTGAAGGGTCAGAGAAACCGG
GAAACTGTTACAGACCCCTCACTGAGGTCTTATCTATAGTTCAGCTGTCG
CTATCCAGAATCAGGCCCAACTAAGAGCAGATGTGATTTTGCTCTGACAG
AGTGTCTGACATCAGAGTTGATTTGGATGATTTACAAAGGACATTTCACC
GGATGCGTGTTTCTCCCGTTCACACTTTTCTTTGTCCTTTGTGTAGCCAT
TTTTGAGCCTGACTAGCTTTAGCTCGATCTGGTTTCTAGTTCTTGGTAAT
TTGGCCCCGTAACCTCGCCCCTTATTTATAAGACCATTAGCTTAATCCCT
CTGTTTTTTAATTTTTCCTGAAGTTTCTCACCCTCTTTGTAGGTCCCTAA
TCTAATGAGTTTTACACGCTTTCTTTTCCCTTTTCGCCTCTCATGTTCCT
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_i04.g1 MSMg01no398_i04.g1 CHROMAT_FILE:
MSMg01no398_i04.g1 PHD_FILE: MSMg01no398_i04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:15 2005
         (333 letters)



>mm_chr7_109663177_109663909
          Length = 733

 Score =  542 bits (280), Expect = e-158
 Identities = 320/336 (95%), Gaps = 6/336 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaccaggctggtcttgaacacagagattcacctgtctctgactccttcctgagtgctgg 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 agaccaggctggtcttgaacacagagattcacctgcctctgactccttcctgagtgctgg 260

                                                                       
Query: 61  aattaaatgtgtgtgctagtattctcatctgggaaaataaacattttaagtgatcgatat 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 aattaaatgtgtgtgctagcattctcatctgggaaaataaacattttaagtgatcgacat 320

                                                                       
Query: 121 gtctacatgcagagttgagcagggtctgactcacaagtgttaagagagtattgggacaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 321 gtctacatgcagagttgagcagggtctgactcacaagtgttaagagagtacagggacaga 380

                                                                       
Query: 181 cacagtataaagacagaagtggccagcttttatctgcctcagttatccatcagat---tt 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||   | 
Sbjct: 381 cacagtataaagacagaagtggccagcttttatctgcctcagttatccatcagatgcct- 439

                                                                       
Query: 238 tnatcgtttgcagtgaagggtcagagaaaccgggaaactgttacagacccctcactgagg 297
             | ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 --accggctgcagtgaagggtcagagaaaccgggaaactgttacagacccctcactgagg 497

                                               
Query: 298 tcttatctatagttcagctgtcgctatccagaatca 333
           ||||||||||||||||||||||||| ||| ||||||
Sbjct: 498 tcttatctatagttcagctgtcgctttccggaatca 533


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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