BAC Information

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BAC

Clone NameMSMg01-398K10
Chromosome7 (Build37)
Map Location 135,435,329 - 135,435,579
singlet/doubletsinglet
Overlap geneBC017158
Upstream geneItgal, Zfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c, Setd1a, Hsd3b7, Stx1b2, Stx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72, LOC436010, EG668675, Itgam, Itgax, Itgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1, Slc5a2
Downstream geneEG628781, Rgs10, LOC100043643, Tial1, Bag3, EG639030, Inpp5f, LOC100043651, 1110007A13Rik, Sec23ip, LOC210714, LOC100043144, Ppapdc1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398K10.T7 (MSMg01no398_k10.b1)MSMg01-398K10.TJ (MSMg01no398_k10.g1)
ACCAG498703AG498704
length748746
length of high quality
(start - end)
252 (319 - 570)259 (324 - 582)
definitionCHROMAT_FILE: MSMg01no398_k10.b1 PHD_FILE: MSMg01no398_k10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:27 2005CHROMAT_FILE: MSMg01no398_k10.g1 PHD_FILE: MSMg01no398_k10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAGTCCTAGTGTCACNNNNNNNNNCNCTATTTCAACAACACCGNNGGAAT
CNGATGGTAACTACAAACCCTCCTGGAAGTCTGGGAAGGATCATCCTATT
TCATAGACAATGTTACTGAGTCTCAAAGGAGACACACGATGGACTGGAGC
ATCTTATAACAAATGTCTTTCCAGCTTTCCTGAAAGACTGATGTCATGGG
AACATGGGGTCTACCACAATCTCCCAACAGATCTCATGTGTACGATACAC
TCCTACTCAGGCTCTCTACCTCTCCGTTTCTGTCCCTCGCCTGGACCCAG
AATACCCATCTATGTAACTTCATAGGTACCCAACTTTCTATAAAGTAAAA
GTTTTCACTTGAACTTCTTTCCTTCAAGGACATTAGATTATATACAAAAT
TTTATGTTTCAGATTTTATATTAGATCCGTTTGTTATCTTGAATATGGCA
AGATTACTGCTTCTGAGAGAGTCACTGAGGCAGGCTCCATGTCTTCCTTT
TAGTTTTGTACTTACATCAAAGGGCATACATCCTCCCCAGACCATTCGAT
GGAGATGAGGAAAGGTCTACGGATCAATAGAAGCAGTCCCCGGGGCCCCA
ACACAGTCTGGAAAGTGCCATTATGGTAAAACAATGACATAATGTCCTAT
CTATTACCCGAAAGCTCATATTGTCTACCAGAATAGGAAATTTAATTCTC
ACCCTCCNCTTTGTCTTTCTTTATCCCAACCGACAAATTACCAATTAC
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTAGGAGACAGAGGTGCAAAAGGTCCA
AGCAAGATGCTTGGAATATACAAAGGAAGCAGGTTGGGACTGAAGGAGAG
GTAACTAACCATGTGGAAGACATAAAATAGTTTGAATGGGTTAAATACAT
TACAAGCTAGTCAGGGAATAAGCCAAAGCTTGTGGCCAAGGCATTTATTA
ATAAATAGTCTCCCGTCGTCATTCTGGGAGCAGGGAATGGGAAGGAAAAA
TGGATTATTTTTTACATATTTTTATTGTTTAGTGTCTTCTTTATGCATTT
TCTCCTTTATTAATATATAGAGGCCTTCATTTCTTTAATTTTGAAATCTA
CTTTATCCGATGTTAGAATGGCTATGCCAGCATGTTTTTGTTTCCTCTGG
CTTGCTTTCCATCCTTCGACTCTGTCTGTTAGTGTCTTCATCACTGAGAT
GTGTTTCTTGCAGTCAACGGATAGTTGGATATAGTCTTTTAATTCTAGTT
AGACACTCTGCATCGCTTTATTGGCAAGGTGGGGTCATTTATATTTAAGG
GTACTAGTATGAGAGATGCATACTAACCACTGGAAATTTGTCCACTGTTT
CTCTCATTGGTTGGATTACCGGTTTATTTTTACTTTCTCCCCTATCAGGA
TCAAAGGGTCCCTGAATTACCGTGTAGATCTTGACGGATTCCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_k10.b1 MSMg01no398_k10.b1 CHROMAT_FILE:
MSMg01no398_k10.b1 PHD_FILE: MSMg01no398_k10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:27 2005
         (252 letters)



>mm_chr7_135435129_135435779
          Length = 651

 Score =  420 bits (217), Expect = e-122
 Identities = 244/253 (96%), Gaps = 3/253 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcataggtacccaactttctataaagtaaaagttttcacttgaacttctttccttcaag 60
           |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 201 ttcataggtacccaactttctataaaataaaagttttcactt-aacttctttccttcaag 259

                                                                       
Query: 61  gacattagattatatacaaaattttatgtttcagatttt-atattagatccgtttgttat 119
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 260 gacattagattatatacaaaattttatgtttcagatttttatattagatccgtttgttat 319

                                                                       
Query: 120 cttgaatatggcaagattactgcttctgagagagtcactgaggcaggctccatgtcttcc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cttgaatatggcaagattactgcttctgagagagtcactgaggcaggctccatgtcttcc 379

                                                                       
Query: 180 ttttagttttgtacttacatcaaagggcatacatcctccccagaccattcgatggagatg 239
           ||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||| |
Sbjct: 380 ttttagttttgtacttacatcaaagggcata-atcctccccagactattcgacggagacg 438

                        
Query: 240 aggaaaggtctac 252
           |||  ||||||||
Sbjct: 439 aggggaggtctac 451


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 651
Length adjustment: 9
Effective length of query: 243
Effective length of database: 642
Effective search space:   156006
Effective search space used:   156006
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)