BAC Information

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BAC

Clone NameMSMg01-398L20
Chromosome7 (Build37)
Map Location 66,892,408 - 66,892,911
singlet/doubletsinglet
Overlap genenone
Upstream geneAtp10a, LOC621446, LOC668811, LOC668813, LOC668815, EG668818, Ube3a, LOC100040985, LOC100041010, LOC100041029, LOC100041051
Downstream genePwcr1, LOC664788, Snrpn, Snurf, EG664849, LOC100041201
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398L20.T7 (MSMg01no398_l20.b1)MSMg01-398L20.TJ (MSMg01no398_l20.g1)
ACCAG498771AG498772
length738728
length of high quality
(start - end)
514 (51 - 564)199 (326 - 524)
definitionCHROMAT_FILE: MSMg01no398_l20.b1 PHD_FILE: MSMg01no398_l20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:34 2005CHROMAT_FILE: MSMg01no398_l20.g1 PHD_FILE: MSMg01no398_l20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCGTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAAGAATTTCCAACTGTGCAACCCACATTTTCTCTGTTAAT
GAAAATCTGAGGGAGATTACACACACACACACACACACACACACACACAC
ACACACACACACACACACCTAACAAGCTAATTTCTTTATATACTAAATTA
AGTCCTGTATTAAGTTCTTATATAGGCTTCTAATTTGTCCTATGGGTGTA
TAAACCCTATTCAACTGTGACTTATAAAAGTTATCTACACATAGATAGTT
TTTCCTTGGCCAGGAATGTTATCTGAATGGTACAGCCCTGGCCTAGTATG
CAAAAAGGCCCTTGGTTTGATGTTCTGTATCACACAGACAGACATAGACA
CACACATACACACAGAGAGACACTGAAACAAAGGAAAGAATAAAATAGCA
AAGAAAGAAAAGAAATAGAATTGGCTTGGAACATACTTCAGTTGGAAAAG
TACTTGTCCAAATGTAAAGAGTACTGTTTGTTCCCCAGCACCCACATCAG
GAGTCAGACAAGATGGTGGACATTGTGTTTCCAATGCTGGGAAATATAAA
CACCAGGATACTGGAGCTTCTATCGAAACTTTCTAGTCTAATCAGAGATT
CCGTTCACTGGACGAAACAAGGTGCTGTATCCCCCAAAAACAACACTTTT
TGTTTCCCACAAGAATACTGGCTCCCCTGGATGGAAAN
CCCTACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCCCAGCAAAATTCAGGGAAGTCACCCTAGAGCCCC
CCAAGGAGTCAACGGACCTCTTGTGACCCTGTTGCCCTGGTTGGGCCTCA
GCGTAATCCTATTGAGCATGAATTTTATGTCATCACCTTTCTTCATGGCA
TTGGGTTGTCATCATTGACCCAGTCCTAGACAGAATTCGGCTACCTCTAC
TTGGATATCACCTAACCTAATCCAACCACTTACCTTCCTTTCCAAAACTG
GCTCAGAGTAGGAATGGTTTTATGTAACTGGAGAGGGATTGCTGGGACGA
AATGTCTTCCAAGGAAGCAAGGGCTCCCTTTCTTGATACTTGGAAGAATG
TCTTCCCTAAGGAGGAAAGGGAAAGAAGTCAAGACGCTTGTTGACCCTTC
TTTAAATAAAGGTCAGAGGAGAGAGACATTTTTCTGGAGCTCTACTTGTA
CAACTTCATTGTGCAGAAACTGTCCTGGGGTTACCTCTTGTATTACTAAC
AGTCCAGCACACACAAGTCTTCCTGGCTACCATAGAGAAACATCAGTGGA
TCCACAAAGGAATCCCTGTCATTCCAATAAAGATTTACTGCTTCCTTCTT
TAGCTACCGACACATTCCCAGCGGACCTTAGCCCCTCCCTTTTTGTAGGG
AATCACCCCTCTAGTTGGAATTTGCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_l20.b1 MSMg01no398_l20.b1 CHROMAT_FILE:
MSMg01no398_l20.b1 PHD_FILE: MSMg01no398_l20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:34 2005
         (514 letters)



>mm_chr7_66892274_66893187
          Length = 914

 Score =  891 bits (461), Expect = 0.0
 Identities = 496/515 (96%), Gaps = 15/515 (2%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaag--aatttcc--aactgtgcaacccacattttctctgttaatgaaaatctg 59
           ||||||||||  ||   ||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 638 ggaattcaagaaaa---ccaaaactgtgcaacccacattttctctgttaatgaaaatctg 582

                                                                       
Query: 60  agggagattacacacacacacacacacacacacacacacacacacacacacacacacacc 119
           |||||||||        |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 agggagatt--------acacacacacacacacacacacacacacacacacacacacacc 530

                                                                       
Query: 120 taacaagctaatttctttatatactaaattaagtcctgtattaagttcttatataggctt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 taacaagctaatttctttatatactaaattaagtcctgtattaagttcttatataggctt 470

                                                                       
Query: 180 ctaatttgtcctatgggtgtataaaccctattcaactgtgacttataaaagttatctaca 239
           ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 469 ctagtttgtcctatgggtgtataaaccctattcaactgtgacttataaaagatatctaca 410

                                                                       
Query: 240 catagatagtttttccttggccaggaatgttatctgaatggtacagccctggcctagtat 299
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 409 catagatagtttttccttggccaggaatgttagctgaatggtacagccctggcctagtat 350

                                                                       
Query: 300 gcaaaaaggcccttggtttgatgttctgtatcacacagacagacatagacacacacatac 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gcaaaaaggcccttggtttgatgttctgtatcacacagacagacatagacacacacatac 290

                                                                       
Query: 360 acacagagagacactgaaacaaaggaaagaataaaatagcaaagaaagaaaagaaataga 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 acacagagagacactgaaacaaaggaaagaataaaatagcaaagaaagaaaagaaataga 230

                                                                       
Query: 420 attggcttggaacatacttcagttggaaaagtacttgtccaaatgtaaagagtactgttt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 attggcttggaacatacttcagttggaaaagtacttgtccaaatgtaaagagtactgttt 170

                                              
Query: 480 gttccccagcacccacatcaggagtcagacaagat 514
           |||||||||||||||||||||||| ||||||||||
Sbjct: 169 gttccccagcacccacatcaggagccagacaagat 135


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)