Query= MSMg01no398_m03.b1 MSMg01no398_m03.b1 CHROMAT_FILE:
MSMg01no398_m03.b1 PHD_FILE: MSMg01no398_m03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:35 2005
(333 letters)
>mm_chr7_60737134_60737866
Length = 733
Score = 611 bits (316), Expect = e-179
Identities = 328/332 (98%)
Strand = Plus / Plus
Query: 2 tgttgatctgcttacctagcataggctaaagaggaacctagggtctgacaagggggcaga 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tgttgatctgcttacctagcataggctaaagaggaacctagggtctgacaagggggcaga 261
Query: 62 gtttaactaaggctaacaaacagaaagaggatagagactgagctttctgtcctacacatt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gtttaactaaggctaacaaacagaaagaggatagagactgagctttctgtcctacacatt 321
Query: 122 cttagtctttctgactttgcttatttttctgtcatgaataattcagttttctctcctgtc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cttagtctttctgactttgcttatttttctgtcatgaataattcagttttctctcctgtc 381
Query: 182 tcctttaaatacacaatccttactttacaattataattttgttgcctattagaggtcata 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tcctttaaatacacaatccttactttacaattataattttgttgcctattagaggtcata 441
Query: 242 atttttgttttttaatgaaaattatggtctcatgcaatctgacatattcatgcttcctat 301
||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 442 atttttgcttcataatgaaaattatggtctcatgcaatctgacatattcttgcttcctat 501
Query: 302 ttgattgaaaaggttctgagaatgaaaatgag 333
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Sbjct: 502 ttgattgaaaaggttctgagaatgaaaatgag 533
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space: 234576
Effective search space used: 234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no398_m03.g1 MSMg01no398_m03.g1 CHROMAT_FILE:
MSMg01no398_m03.g1 PHD_FILE: MSMg01no398_m03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:35 2005
(245 letters)
>mm_chr7_60908955_60909598
Length = 644
Score = 327 bits (169), Expect = 4e-94
Identities = 237/281 (84%), Gaps = 38/281 (13%)
Strand = Plus / Minus
Query: 1 tacatagataaaatcatggataatacaggggggaaaaaaaggatgagtttattgaccatg 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 308 tacatagataaaatcatggataataca-gggggaaaaaaaggatgagtttattgaccatg 250
Query: 61 tgaggaattatggtagcctcatcagaaataagaacagtaaacttagaa---agat----- 112
||||||||||||||||||| ||||||||||||| ||||||||||||| ||||
Sbjct: 249 tgaggaattatggtagccttgtcagaaataagaagagtaaacttagaaaatagatagaac 190
Query: 113 ---------t-------------t----aat---ataggaaacaagaggccaatggttta 143
| | ||| ||||||||||||||||||| ||||||
Sbjct: 189 aatggagtatcccaccccacccctgggaaatttaataggaaacaagaggccaacggttta 130
Query: 144 atataatcgtgtccaatgcatcgtttacaaatctttatttctggtttaggtcccacagat 203
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct: 129 atataatcgtgtccaatgcatcgtttacaaatgtttatttctggtttaggtcccacagtt 70
Query: 204 atctgttagatggattcagaagttttaaccaatgcatccag 244
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Sbjct: 69 atctgttagatggattcagaagttttaaccaatgcatccag 29
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 644
Length adjustment: 9
Effective length of query: 236
Effective length of database: 635
Effective search space: 149860
Effective search space used: 149860
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
