Query= MSMg01no398_n15.b1 MSMg01no398_n15.b1 CHROMAT_FILE:
MSMg01no398_n15.b1 PHD_FILE: MSMg01no398_n15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:42 2005
(573 letters)
>mm_chr7_72100102_72101075
Length = 974
Score = 980 bits (507), Expect = 0.0
Identities = 558/579 (96%), Gaps = 8/579 (1%)
Strand = Plus / Minus
Query: 3 aggaagcagtatagactctgggggagtttcaaaggatttttgttctgttttgttttgttt 62
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 846 aggaagcagtatagactctgggggagttgcaaaggattgttgttctgttttgttttgttt 787
Query: 63 tgttt-------cagtttccaaggtgagttttcaaactttactaacaccagagatgaatt 115
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 786 tgttttgttttgcagtttccaaggtgaattttcaaactttactaacaccagagatgaatt 727
Query: 116 taaatttctgtttattattgttaatgaaagcaaatgcataaatcctcaaaaagagtgatt 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 taaatttctgtttattattgttaatgaaagcaaatgcataaatcctcaaaaagagtgatt 667
Query: 176 tttctaaagacaaaagactagtaatgaattaaaaatccaagaacaatggaaacaatcaaa 235
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 aaactaaagacaaaagactagtaatgaattaaaaatccaagaacaatggaaacaatcaaa 607
Query: 236 gaaatttttcattctttgattatagtcatcgctgtgttaatatcttattgttagatacaa 295
|||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 606 gaaactcaacattctttgattatagtcattgctgtgttaatatcttattgttagatacaa 547
Query: 296 taatcaataaaaagggaaaacaatatagaggctttcgatgtgataaccagcaatgtatca 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 taatcaataaaaagggaaaacaatatagaggctttcgatgtgataaccagcaatgtatca 487
Query: 356 aatatcagtacatcaaaaatatcaaaaatattgtgccaatatatttgaaaatttagaaga 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 aatatcagtacatcaaaaatatcaaaaatattgtgccaatatatttgaaaatttagaaga 427
Query: 416 aatgcttagttttagtgagtaatttaaagagccaatttcaccccaagaagcagacccaaa 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 aatgcttagttttagtgagtaatttaaagagccaatttcaccccaagaagcagacccaaa 367
Query: 476 tagagcaatacctattccaatgtctgagtcaggctgagactctgctgttccttgc-ggat 534
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 366 tagagcaatacctattccaatgtctgagtcaggctgagactctgccgttccttgctggat 307
Query: 535 agcagacctcaactatacaggtaaattttactttaagaa 573
||||||||||||||| |||||||||||||||||||||||
Sbjct: 306 agcagacctcaactacacaggtaaattttactttaagaa 268
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 974
Length adjustment: 10
Effective length of query: 563
Effective length of database: 964
Effective search space: 542732
Effective search space used: 542732
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no398_n15.g1 MSMg01no398_n15.g1 CHROMAT_FILE:
MSMg01no398_n15.g1 PHD_FILE: MSMg01no398_n15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:43 2005
(233 letters)
>mm_chr7_71888894_71889526
Length = 633
Score = 393 bits (203), Expect = e-114
Identities = 224/231 (96%)
Strand = Plus / Plus
Query: 3 ctcctgggtcccagatagtgttggaagccagggtggggtgagcccacaggaaaggtagtc 62
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 203 ctcctgggtcccagatagtgttggaagccagggtggggtgagcccagaggaaaggtagtc 262
Query: 63 ctctcaggcccaagtgtttcttaaccaaggtaaactggcctttgcctaaggacagaacag 122
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 263 ctctcgggcccaagtgtttcttagccaaggtaaactggcctttgcctaaggacagaacag 322
Query: 123 gagccacgggaccaaatccctcctgtcaagtctttccctgtgcttgcccacaagtgtttc 182
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 323 gagccacgggaccaaatccctcctgtcaagtctttccctgtgcttgcccacaagtgggcc 382
Query: 183 ctctcacactgtcctttctcctgcagctgcagctagagaaacacaagggtg 233
|||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 383 ctctcacactgtcctttctcctgcagctgcagctagagaagcacaagggtg 433
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space: 139776
Effective search space used: 139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
