BAC Information

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BAC

Clone NameMSMg01-399B15
Chromosome7 (Build37)
Map Location 136,805,525 - 136,964,086
singlet/doubletdoublet
Overlap genenone
Upstream geneInpp5f, LOC100043651, 1110007A13Rik, Sec23ip, LOC210714, LOC100043144, Ppapdc1a, Brwd2
Downstream geneLOC100043150, Fgfr2, LOC546005, Ate1, LOC100043163, Nsmce4a, Tacc2, LOC619876, Btbd16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399B15.T7 (MSMg01no399_b15.b1)MSMg01-399B15.TJ (MSMg01no399_b15.g1)
ACCAG499046AG499047
length744749
length of high quality
(start - end)
629 (67 - 695)467 (78 - 544)
definitionCHROMAT_FILE: MSMg01no399_b15.b1 PHD_FILE: MSMg01no399_b15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:01 2005CHROMAT_FILE: MSMg01no399_b15.g1 PHD_FILE: MSMg01no399_b15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,963,452 - 136,964,086)(136,805,525 - 136,805,991)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAAGAGAATCCGCGGA
ATTCCAGGTTTCTCATCTCTCTGCCCTGCCAACACCAGGAGGTATCCTGC
CTGCCTCCCCAGGCTGGTTCTCCATTTGTCCAGTTAGGGTATCCTGGCTC
CAGCAGGCCTGTCCAATTTGAACTAAGTGTTGAAAGTCATACTGCTGAGC
AGACAATGGATGACTGGACCACACACTTCCTTCCCTGCCGTACTTCCTTC
CCCAGCTCACACCTCTACTGGTCCATCTTCACACCCCAGAGCACTGTCAA
GGTTGCTCTGCGGGAGGGTCTTTAAAAATAGCATTTCTATGATGAAACAA
TGTCCCTTGTTTGGAAATAGGCAGAGCTTATAAAATATGTTCCTGTGTTT
TCCTGGATCAGGCAACACCGCGGAGTCTGGGGACTTATTTACAATGAAGA
AATTGTTTTTTTGCAAGTAGTGAAAGGGAAGGCTTGCTTTCAGAGGGCTG
AGTAAAGGAGCTATTGTTTTTCTGTAATTGTGAACACAAGCTGGGAAAGG
GTGATTTTTACAGAGAAGAAAGGCTTAGGGAACGTGACTGTCCACTTCTT
TGAGACGGACTAGCTAGGAAAAAAACAGTGGACCCTGTGTTGTTCTCCCC
TCCCCATCTTTCCCAACCTTGTCTCATCTTTTCTGTTCCAGCCCTCACCA
ATGAATATATACTGGNCTGTCCTCCATTACTGTCCACAAACCCA
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTGGGATTTGGCCACAAGGCCAC
AGCTAACAGATTTGGGCAGGAATTTTGTCTGTCTCCTTCTCTGTTTTTAG
AAGAAATAAGCCCCTGTCTAAGCAGAATTGAGCCTAATATTATCTAGTTC
TCTTCAACGTCTGAGCAAAAATTGCACGGTTACTCTGGCAGCGTGACTGT
CTGGGGAGTGTGGTCTCTGGGAGAGCAAGTCCTTTGCCCAGGACGTGGTC
CATTGTTAGTTAGCAAGGCCCAGTTCTGCGTGGGAGGAACTTAGCAGATG
TTGCCTTATAGTCAGGAAACATGCTGCTTGTAATTTTGCTTTGGCGCAGT
GCAGTGTTCTGCATGCAACCCGCGTTTTCTAATTGTAAACAAACAAACTA
ACTGACAAAACAAAGCAACAATGGCCAAAGGTGTTCACAGGAGCTGGTCT
CAGGTTCCACTCCCTTCCCAATAGCATCTTTCCCTGGTCTCTGTCTCTGC
AGGATGAGGCTTGACTAGCCTGTATCTCTCTGGCTTTTTCCTTCTAGACT
ACTGCTTGAACGCTGTACTGTATAAGGCACTAGACTGAGATGCTGGATCA
ACTGCGCATGCTCTGCCCTTGTGACCGGCTGCTTTAATCTATCCTTCCGA
GTCCGTGTGTCACGTTGTAAAGTTGTTTCTACTACTTAAATTTTTTGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_b15.b1 MSMg01no399_b15.b1 CHROMAT_FILE:
MSMg01no399_b15.b1 PHD_FILE: MSMg01no399_b15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:01 2005
         (629 letters)



>mm_chr7_136963252_136964286
          Length = 1035

 Score = 1143 bits (591), Expect = 0.0
 Identities = 622/635 (97%), Gaps = 6/635 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctctctgccctgccaacaccaggaggtatcctgcctgcctccccaggctggttctccatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 ctctctgccctgccaacaccaggaggtatcctgcctgcctccccaggctggttctccatt 776

                                                                       
Query: 61  tgtccagttagggtatcctggctccagcaggcctgtccaatttgaactaagtgttgaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 tgtccagttagggtatcctggctccagcaggcctgtccaatttgaactaagtgttgaaag 716

                                                                       
Query: 121 tcatactgctgagcagacaatggatgactggaccacaca----cttccttccctgccgta 176
           |||||||||||||||||||||||||||||||||||||||    |||||||||||||||||
Sbjct: 715 tcatactgctgagcagacaatggatgactggaccacacacttccttccttccctgccgta 656

                                                                       
Query: 177 cttccttccccagctcacacctctactggtccatcttcacaccccagagcactgtcaagg 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 cttccttccccagctcacacctctactggtccatcttcacaccccagagcactgtcaagg 596

                                                                       
Query: 237 ttgctctgcgggagggtctttaaaaatagcatttctatgatgaaacaatgtcccttgttt 296
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 ttgctctgcgggagggtccttaaaaatagcatttctatgatgaaacaatgtcccttgttt 536

                                                                       
Query: 297 ggaaataggcagagcttataaaatatgttcctgtgttttcctggatcaggcaacaccgcg 356
           |||||||||||||||||||||||||||||||||||||||||||||||||| ||||  | |
Sbjct: 535 ggaaataggcagagcttataaaatatgttcctgtgttttcctggatcagggaacattgtg 476

                                                                       
Query: 357 gagtctggggacttatttacaatgaagaaattgtttttttgcaagtagtgaaagggaagg 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gagtctggggacttatttacaatgaagaaattgtttttttgcaagtagtgaaagggaagg 416

                                                                       
Query: 417 cttgctttcagagggctgagtaaaggagctattgtttttctgtaattgtgaacacaagct 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 cttgctttcagagggctgagtaaaggagctattgtttttctgtaattgtgaacacaagct 356

                                                                       
Query: 477 gggaaagggtgatttttacagagaagaaaggcttagggaacgtgactgtccacttctttg 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 gggaaagggtgatttttacagagaagaaaggcttagggaacgtgactgtccacttctttg 296

                                                                       
Query: 537 agacggactagctagg--aaaaaaacagtggaccctgtgttgttctcccctccccatctt 594
           ||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 295 agacggactagctaggaaaaaaaaacagcggaccctgtgttgttctcccctccccatctt 236

                                              
Query: 595 tcccaaccttgtctcatcttttctgttccagccct 629
           |||||||||||| ||||||||||||||||||||||
Sbjct: 235 tcccaaccttgtttcatcttttctgttccagccct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1035
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1025
Effective search space:   634475
Effective search space used:   634475
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no399_b15.g1 MSMg01no399_b15.g1 CHROMAT_FILE:
MSMg01no399_b15.g1 PHD_FILE: MSMg01no399_b15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:02 2005
         (467 letters)



>mm_chr7_136805325_136806191
          Length = 867

 Score =  810 bits (419), Expect = 0.0
 Identities = 455/467 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgggatttggccacaaggccacagctaacagatttgggcaggaattttgtctgtctcct 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgggatttggccacaaggccacggctaacagatttgggcaggaattttgtctgtctcct 260

                                                                       
Query: 61  tctctgtttttagaagaaataagcccctgtctaagcagaattgagcctaatattatctag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctctgtttttagaagaaataagcccctgtctaagcagaattgagcctaatattatctag 320

                                                                       
Query: 121 ttctcttcaacgtctgagcaaaaattgcacggttactctggcagcgtgactgtctgggga 180
           |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 ttctcttcaacgcctgagcaaaaattgcagggttactctggcagcgtgactgtctgggga 380

                                                                       
Query: 181 gtgtggtctctgggagagcaagtcctttgcccaggacgtggtccattgttagttagcaag 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 gtgtggtctctgggagagcaagtcctttgcccaggacgtggtccattgttagttagcagg 440

                                                                       
Query: 241 gcccagttctgcgtgggaggaacttagcagatgttgccttatagtcaggaaacatgctgc 300
           ||||||  |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 gcccagggctgcgtgggaggaacttagcagatgttgccttgtagtcaggaaacatgctgc 500

                                                                       
Query: 301 ttgtaattttgctttggcgcagtgcagtgttctgcatgcaacccgcgttttctaattgta 360
           ||||||||||||||||||||||||||||||||||||||||||  | ||||||| ||||||
Sbjct: 501 ttgtaattttgctttggcgcagtgcagtgttctgcatgcaacttgtgttttctgattgta 560

                                                                       
Query: 361 aacaaacaaactaactgacaaaacaaagcaacaatggccaaaggtgttcacaggagctgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aacaaacaaactaactgacaaaacaaagcaacaatggccaaaggtgttcacaggagctgg 620

                                                          
Query: 421 tctcaggttccactcccttcccaatagcatctttccctggtctctgt 467
            ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctcaggttccactcccttcccaatagcatctttccctggtctctgt 667


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space:   391649
Effective search space used:   391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)