Query= MSMg01no400_a09.b1 MSMg01no400_a09.b1 CHROMAT_FILE:
MSMg01no400_a09.b1 PHD_FILE: MSMg01no400_a09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:11 2005
(510 letters)
>mm_chr7_90789051_90789961
Length = 911
Score = 963 bits (498), Expect = 0.0
Identities = 504/506 (99%), Gaps = 1/506 (0%)
Strand = Plus / Minus
Query: 6 gaattcacactccttccc-aagatacaaactggcctgaggcagttacaagccggtttcat 64
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 gaattcacactccttcccaaagatacaaactggcctgaggcagttacaagccggtttcat 652
Query: 65 ggggatgtgaaccttaacccacaaagggagaaacagatagaaagagatgattctgatgga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 ggggatgtgaaccttaacccacaaagggagaaacagatagaaagagatgattctgatgga 592
Query: 125 agagatcacaaacggtagattgaaagtatttttccttaaggcttatcctgtggtttaaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 agagatcacaaacggtagattgaaagtatttttccttaaggcttatcctgtggtttaaaa 532
Query: 185 catcattttccaagttgacacttttgtaaagagggaaagtcttgtgctaaaaatttgtat 244
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 531 catcattttccaagttgacacttttgtaaagagtgaaagtcttgtgctaaaaatttgtat 472
Query: 245 acaaaagcatatccagaaagggaacacaggagtctgggaactccagatgccagaggaagc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 acaaaagcatatccagaaagggaacacaggagtctgggaactccagatgccagaggaagc 412
Query: 305 aggacttagcgaccacaatggatgatgattctttaagacccacacagggacaaggtgtct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 aggacttagcgaccacaatggatgatgattctttaagacccacacagggacaaggtgtct 352
Query: 365 tacagcaaccagcacacagggctctggaccacaaggaatcaaagagtacgtgagccatct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 tacagcaaccagcacacagggctctggaccacaaggaatcaaagagtacgtgagccatct 292
Query: 425 ctcaggtggccatagagggacttgccctggcctgccaggcctatgtgtgcaccacggcaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ctcaggtggccatagagggacttgccctggcctgccaggcctatgtgtgcaccacggcaa 232
Query: 485 gctagtggttagctccttccacacca 510
||||||||||||||||||||||||||
Sbjct: 231 gctagtggttagctccttccacacca 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 911
Length adjustment: 10
Effective length of query: 500
Effective length of database: 901
Effective search space: 450500
Effective search space used: 450500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no400_a09.g1 MSMg01no400_a09.g1 CHROMAT_FILE:
MSMg01no400_a09.g1 PHD_FILE: MSMg01no400_a09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:11 2005
(496 letters)
>mm_chr7_90601729_90602623
Length = 895
Score = 804 bits (416), Expect = 0.0
Identities = 470/496 (94%), Gaps = 16/496 (3%)
Strand = Plus / Plus
Query: 1 actctcatccacctctagtccttgagcaactctgtacttttagatttctgcctcttgcct 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 actctcatccacctctagtccttgagcaactctgtacttttagattcctgcctcttgcct 260
Query: 61 cctgctctaccaagtgtcttcaattagctttcctctgtccaccaactgctctcattctgt 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgctctaccaagtatcttcaattagctttcctctgtccaccaactgctctcattctgt 320
Query: 121 tccaccttctagagagcaatactctcacctggctgccttagtaggaccttacaggaagct 180
||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 321 tccaccttctagagagcaacactctcacctggctgtcttagtaggacctcacaggaagct 380
Query: 181 ttttaacataagggaagagacaacttaaaagaaaatggtagacaaagatggattagcaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttaacataagggaagagacaacttaaaagaaaatggtagacaaagatggattagcaaa 440
Query: 241 agatgagtgggtagatagatggctgataaatatgagacaagcatgtatagtttaaaataa 300
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 441 agatgagtgggtagatagatgactgataaatatgagacaagcat-tatagtttaaaataa 499
Query: 301 gaattatagtagggcagcataaatgagtgatacacacacacacacacacatacacacaca 360
|||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 500 gaattatagtagggaagcatagatgagtgatacacacacacacacacaca--cacacaca 557
Query: 361 cacacacacacacacacacacacatggggtagagaaaggccaatagttgttactgggctt 420
||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 558 cacacacacacac------------ggggtagagaaaggccaatagttgttactgggctt 605
Query: 421 aatgacccaattgagtattagaattttacagcatgatagtttgagtctaaataaactttc 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 606 aatgacccaattgagtattagaattttacagcatgatagtttgagtctaaataaacttcc 665
Query: 481 tcccattttttaaaag 496
|||| ||||| |||||
Sbjct: 666 tccccttttt-aaaag 680
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 895
Length adjustment: 10
Effective length of query: 486
Effective length of database: 885
Effective search space: 430110
Effective search space used: 430110
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
