BAC Information

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BAC

Clone NameMSMg01-400D04
Chromosome7 (Build37)
Map Location 50,005,755 - 50,006,268
singlet/doubletsinglet
Overlap geneEG546965
Upstream geneEG628403, EG628422, Gprc2a-rs1, EG628444, EG434174, EG637913, EG434175, LOC100039556, EG637898, Gprc2a-rs2, LOC434177, Vmn2r-ps60, 4933421I07Rik, LOC628503, BC063263, LOC100039449, EG637776, C330019L16Rik, EG434179
Downstream geneLOC546964, LOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612, LOC385199, LOC100039589, EG668620, Zfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719, 4933405K07Rik, Ceacam18, Siglece, Atpbd3, Klk14, Klk13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400D04.T7 (MSMg01no400_d04.b1)MSMg01-400D04.TJ (MSMg01no400_d04.g1)
ACCAG499878AG499879
length772780
length of high quality
(start - end)		547 (42 - 588)518 (75 - 592)
definitionCHROMAT_FILE: MSMg01no400_d04.b1 PHD_FILE: MSMg01no400_d04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:25 2005CHROMAT_FILE: MSMg01no400_d04.g1 PHD_FILE: MSMg01no400_d04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:26 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAAT
TCCATGCTCTTTTCTGGTGTGTCTGAAGAAATTGACAGTGAGTTCACATA
CATAAAATAAATAAGAAAATGAATCTATGAAAAAAATGTTTTATCACATT
GTTTACAGTCTTGGTGTTCCCCTTCCTTGTGGGTTGTTTTTCATCATTAG
AGATACCTGTGAGGTTTAGAGCATTTATTCCTTGGCTCACATTTACACCA
GACTTTAGATACATCAAGTTTTTCAGATACTTGAACAAAACTGCATGAAT
TCACAGATTTACCTTCATAATTGTGTTCACAAATTTTATTGCACTGTGAG
TCATATCATATTTGAAAAGTGAAGGACAATCAAAAATTCCATATTCTTAA
TGCTCATAGGATTTTCTGTAGTATAATTTTATGGTTTTATTCCAAATGAA
GCTGAAAATCTAAGTGACTATAAACTTGAATCACATTCAGAAAGTCTCCT
CAAAGTGGGGCCTATCATGTACTGTTGTGGATAGCCCTTGGCTAATTATA
TTTGATGTTAATTACATTCTCCTGAGAGTGGTTGTGAACATGGAATGAGT
CAGCCCTCATGTGACTTCCTGTAAACCTACTTCCCACCTTAATTTGTAAA
ATAAAGAGAGCTGATGATTGGGCCCATTAAAGGGAAGGTAGGGAGAGATT
ACTGATAAAAAATGTCATATGTTTTTATTTTTCCTTTCTCTTTCCTCTCT
TTTTACCCTTATTATCTCTCTC

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTACCTTTGGAAAAGTAGTCAATGC
TCTTACCCGCTGAGCCATCTCACCAGCTCGAATCTCCACAGTCAATGAAG
TAAGTATTTTGGGGAGAACTTAAGACACCCACAGCTGTTGACCCATTTCT
ATCTGTACCATGTTTCTTCTCTGACATAACTCTCATGTGTCCATCAATCT
ACAGAAAAACCATTCTTTCCTTTTTCTACAGAAGGTGCTTCTGCACACCC
TCTAAAATCCTGGTTCTTGGTGATGTGATCTAACAAGTGCTCACACCAGT
ATTTGGCAACCTGAAAACCAGAATGCTCAACATATACAGAAAAACTAAAA
AGACTATGTCTCAAATCCACTTGGCAAATGGATCACAGCTGTATGTGCAT
CCTCCATTTCAACTCGCCAACCTTGCATGCTGCTTAGGCCATATCGAAAC
CCATCCCCCCTGCCCCTGGGCATTATGCTTTTCCATCATTGGCTTGTCTA
GNAATGCTCCCATTATGACTTGATCCTCTAGGTCCAGAGCAGCCCGGNGT
GGTGGTGATGACAGCTGACGGGTAAGGGCGGAAGAGGCGAGGAGCCGGNC
TTGGTCCGGGCCCCAGGCTCTCGGATCCTCTCGGATCAAATCCTCTGGTA
ATCTAACCAGGATGGGGCAAACCCCGCCTTGTGCAACTCGAATAAGTATC
CTAGAAACTCCTTTTTCTCCCCACGTGCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_d04.g1 MSMg01no400_d04.g1 CHROMAT_FILE:
MSMg01no400_d04.g1 PHD_FILE: MSMg01no400_d04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:26 2005
         (518 letters)



>mm_chr7_50005497_50006413
          Length = 917

 Score =  828 bits (428), Expect = 0.0
 Identities = 493/515 (95%), Gaps = 1/515 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   acctttggaaaagtagtcaatgctcttacccgctgagccatctcaccagctcgaatctcc 63
           ||||| |||| || ||||| ||||||||||||||||| |||||||||||| ||| |||||
Sbjct: 772 accttcggaagagcagtcagtgctcttacccgctgagtcatctcaccagcccgagtctcc 713

                                                                       
Query: 64  acagtcaatgaagtaagtattttggggagaacttaagacacccacagctgttgacccatt 123
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 712 acagttaatgaagtaagtattttggggagaacttaagacacccacagctgttgactcatt 653

                                                                       
Query: 124 tctatctgtaccatgtttcttctctgacataactctcatgtgtccatcaatctacagaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 652 tctatctgtaccatgtttcttctctgacataactctcatgtgtccatcaatctccagaaa 593

                                                                       
Query: 184 aaccattctttcctttttctacagaaggtgcttctgcacaccctctaaaatcctggttct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 aaccattctttcctttttctacagaaggtgcttctgcacaccctctaaaatcctggttct 533

                                                                       
Query: 244 tggtgatgtgatctaacaagtgctcacaccagtatttggcaacctgaaaaccagaatgct 303
           |||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||
Sbjct: 532 tggtgatgtgatctaacaagtgctcacagcagtatttggcaacctgagaaccagcatgct 473

                                                                       
Query: 304 caacatatacagaaaaactaaaaagactatgtctcaaatccacttggcaaatggatcaca 363
           || |||||||||||||| ||| ||| ||||||||||||||||||||||||| ||||||||
Sbjct: 472 catcatatacagaaaaaataagaaggctatgtctcaaatccacttggcaaacggatcaca 413

                                                                       
Query: 364 gctgtatgtgcatcctccatttcaactcgccaaccttgcatgctgcttaggccatatcga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 412 gctgtatgtgcatcctccatttcaactcgccaaccttgcatgctgcttaggccatatcgc 353

                                                                       
Query: 424 aacccatcccccctgcccctgggcattatgcttttccatcattggcttgtctagnaatgc 483
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 352 aacccatccccc-tgcccctgggcattatgcttttccatcattggcttgtctaaaaatgc 294

                                              
Query: 484 tcccattatgacttgatcctctaggtccagagcag 518
           |||||||||||||||||||||||||||||||||||
Sbjct: 293 tcccattatgacttgatcctctaggtccagagcag 259


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 917
Length adjustment: 10
Effective length of query: 508
Effective length of database: 907
Effective search space:   460756
Effective search space used:   460756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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