BAC Information

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BAC

Clone NameMSMg01-400D18
Chromosome7 (Build37)
Map Location 124,294,527 - 124,294,771
singlet/doubletsinglet
Overlap genenone
Upstream genePlekha7, Rps13, Pik3c2a, LOC100042798, Nucb2, LOC100043320, EG668484, LOC668485, LOC546993, LOC100043330
Downstream geneXylt1, LOC669758, Rps15a, Arl6ip1, 2610207I05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400D18.T7 (MSMg01no400_d18.b1)MSMg01-400D18.TJ (MSMg01no400_d18.g1)
ACCAG499906AG499907
length814782
length of high quality
(start - end)
302 (47 - 348)245 (78 - 322)
definitionCHROMAT_FILE: MSMg01no400_d18.b1 PHD_FILE: MSMg01no400_d18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:28 2005CHROMAT_FILE: MSMg01no400_d18.g1 PHD_FILE: MSMg01no400_d18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTCXXXXXXXXXXXXXXXXXXXXXXXXXCTATTTCGAGAGCATCCGCG
GAATTCCTGATCTTCCAAAGCTTTTATCATGAAGGGGTGTTGGATTTCGT
CAAATGCTTTCTCAGCATCTAATTAGATGATCATGTGGCTTTTGACTTTG
AGTTTGTTTATATAGTGGATTACGTTGATGGATTTCCATATTTTAAACCA
TCCCTGCATCCCTGGAATGAAACCTACTTGGTCAGGATGGATGATAGTTT
TGATGTGTTCTTGGATTCGGTTTGCAAGGGTTTTTTTTTTTTTTTTTTTT
TTTTTGGAAAGTGAGTATATTTTTTTTACATATGAGTAATTGTGTATGCT
TATAATCTTACCTGTGTACATGCAACTCTTGTATATACATGCTATCTTAG
CTTCTTTCCTAACACCCCCCCCTCCTCCCTTATTCCGACATCCTTTCCTT
TTACTGTGGTCTTTCCTTTTCGTTATTATTCTCCTTCTCTACTTGAACAT
CTTTCTTTACTTTTCTTCTTATCTTTCTCTTTATCTAGCTCTTTCCCTTC
CCCCTTATCTTCTACTCTCTTCTTATCTACTACGCTTCTATTCTTTTCGA
CTTCTACTTCTCTTTTTTTTTTCTCCTTTTTCCCCTTTTCTCTCTCTCCC
TGCCTTTCTCTTCCCGTTCCTACCCGCGCGCTCTTCTCTCTTGCCTCTCT
CTAACTCCTATTTCTCTCACTCCTCGTCTCTCGTCTTGCCTCTTTCACTC
CTGCTTTTCCTCCTCTTTCTCCCTTCCCTCCTTCCTTTCATCTCCCTCTC
TTTTTCCCTCTCTC
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGAAAGTCTGAACTAGAGATC
CTGTCTCCAAAATAATTATAATAAGGTTTATTTAATAAATTACTGACTTA
CTTAGCGGTTGTTTTGTGTGGCAGTTACTGAACAGTACAGCAGAGCTTTC
TTTCTTTCTTCAGTGCTGCGGAAGAAGCAGGAGTTTGCATATGCTAAGCA
TGTACTCTACCATGGAGATACGGCCGCAGCCTTGTGACATGCGTTTACAT
CAAAGAGAAATGATTAAAAGCCCTGTTTATCAAATCCGACTTATGATTTC
TGTGATACAAATATGGGCATGGAAAAGTATAGGATTGATGTGTGAGCATT
CTGGATGGATGGGGCTTAGAGACTTTAGATGTTTTAAGTTGCTAATATAG
TTCAGGGGAAAGGAAACCCTGAGGGTCGCAGATCCAACATTTAACCACCG
TATATTGGTGATCAGTAAGAACTGGAGTTTCAAACAAACACGTGTGTCTG
TGCCTACCTCCAAACTACATAATTACTATGCTATGTTGCCCATTTCTGGA
TATGGCAAGACTTACCTTTTTTTGGCTGCTTTTTTTTTTTTCCTCTCCGA
AAGTCCGTACTATTTTTTTTTTTTTTTACATACCCCTCTGCCCTTTTCAA
TGCTCCCAGCTTACCCAGTTTCCTGTGGTTTGTCTTCCACTGTTATCCTT
CTCCTTCTTAATGACATTAATTGGTCTCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_d18.g1 MSMg01no400_d18.g1 CHROMAT_FILE:
MSMg01no400_d18.g1 PHD_FILE: MSMg01no400_d18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:28 2005
         (245 letters)



>mm_chr7_124294327_124294971
          Length = 645

 Score =  443 bits (229), Expect = e-129
 Identities = 241/245 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggaaagtctgaactagagatcctgtctccaaaataattataataaggtttatttaata 60
           |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 445 caggaaagtctgaactagagatcctgtctccaaaataattataaaaaggtttgtttaata 386

                                                                       
Query: 61  aattactgacttacttagcggttgttttgtgtggcagttactgaacagtacagcagagct 120
           ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 385 aattactgacttacttagcggttgttttgtgtggcagttactgtacagaacagcagagct 326

                                                                       
Query: 121 ttctttctttcttcagtgctgcggaagaagcaggagtttgcatatgctaagcatgtactc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttctttctttcttcagtgctgcggaagaagcaggagtttgcatatgctaagcatgtactc 266

                                                                       
Query: 181 taccatggagatacggccgcagccttgtgacatgcgtttacatcaaagagaaatgattaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taccatggagatacggccgcagccttgtgacatgcgtttacatcaaagagaaatgattaa 206

                
Query: 241 aagcc 245
           |||||
Sbjct: 205 aagcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)