BAC Information

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BAC

Clone NameMSMg01-400I02
Chromosome7 (Build37)
Map Location 111,445,398 - 111,445,911
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041187, Olfr597, GA_x5J8B7TU1BB-380-666, Olfr598, Olfr599, Olfr600, Olfr601, Olfr602-ps1, Olfr604, Olfr596-ps1, Dub2, Olfr605, Olfr606, EG546989, Olfr608, Olfr609, Olfr610, Olfr611, EG545985, Olfr614, Olfr615, Olfr616, LOC100042167, Olfr617, Olfr618, Olfr619, Olfr620, LOC667639, Olfr622, Olfr623, Olfr624, Olfr625-ps1, Olfr261-ps1, Olfr260-ps1, Olfr627, Olfr1526-ps1, Olfr629, Olfr630, Olfr69, Olfr68, Olfr67, Hbb-b1, EG436003, Hbb-bh1, Hbb-y, Olfr66, Olfr64, Olfr65, Olfr631, Olfr632, Olfr633, Olfr634-ps1, LOC233614, Olfr635, Olfr636-ps1, Olfr637-ps1, Olfr638, Olfr639, Olfr640, Olfr641, Olfr642, Olfr643, Olfr644, Olfr645, Olfr646, 4931431F19Rik, Ubqln3, Ubqlnl, E030002O03Rik, Olfr647-ps1, Olfr648, Olfr649, Olfr650-ps1, Trim6, LOC667497, EG667823
Downstream geneTrim12, Trim34, 9230105E10Rik, A530023O14Rik, EG434219, LOC100041595, Trim30, AI451617, LOC672495, LOC625305, EG625321, Olfr651, Olfr652, Olfr653, Olfr654, Olfr655, Olfr656, Olfr657, Olfr658, LOC667882, Olfr659, GA_x5J8B7W3SPQ-80592-80214, Olfr661, LOC625495, Olfr662-ps1, Olfr663, Olfr664, EG625530, LOC100042613, LOC233637, Dub1a, Dub1, Olfr665, Olfr666, Olfr667, Olfr668, Olfr669, EG545987, Olfr670, Olfr671, Olfr672, GA_x5J8B7W6B6J-189947-189022, Olfr674-ps1, Olfr675, Olfr676, Olfr677, LOC667987, Olfr678, Olfr679, Olfr680-ps1, Olfr681, Olfr682-ps1, Olfr683, Olfr684, Olfr685, Olfr686, EG668035, Olfr688
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400I02.T7 (MSMg01no400_i02.b1)MSMg01-400I02.TJ (MSMg01no400_i02.g1)
ACCAG500112AG500113
length778788
length of high quality
(start - end)		507 (47 - 553)89 (74 - 162)
definitionCHROMAT_FILE: MSMg01no400_i02.b1 PHD_FILE: MSMg01no400_i02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:50 2005CHROMAT_FILE: MSMg01no400_i02.g1 PHD_FILE: MSMg01no400_i02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:50 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGC
GGAATTCTCTGCTACTGGCCTCAGATGCTACCTTTTGTTTTGTTAGAAAA
CCAGTGCTTGTTTGCACTTTCCAAATTATTTATGTTAATGAGCACAGAGA
CTCATGCAGAGGAGGCAGTACAGGGCTGCTAACAGGGCTAAAGACCTCCC
GAACCATTTGACTGAACTTTGTAGTATTCCAATGTTCCGGTTTCTGATAG
GGGAAAATGGGACATGGAAATGTTTTTCTTCTAGGAAGCAGTTTATTGTG
CCTGCATGGAGGCTCTGGACATTAGTATTCAAAGCCAAATTAAATGCAAT
GGGGCTTCTGTTTGTCTACAAGTTTGGCTTCTGGGTCTCCCATATATGGT
GACATAAAATGTGACTGGGTATCCTAAACTCTCAGGTCATGGTACCAAGG
ATGTGAAGAGAAGAGGGCTGCCTAGGGAACATGCCAAGGCTCCAAACATG
TTGACTAAACCACAGAGACAGCTCTCAGTTCTCTTTTTCTTTGGCCTCTA
GAAATCCCCACTAACTGCTTCAACAAACTTGCAGCACTGACATGGAAATC
CCTTCACCTTGCAAAGGTTCAACTGCTAGTATAGCTTCCTTCTCCCTTTT
ATTGGCCATGGCTTACACAGCATAGATTTGAAGGAAAAAGCTGTAAAATA
ACCAGCTTGTGGAACGAAACGCATATAGATGAACGTTCTTTATACTCGAA
TAAGGTTTTTTTCCACTGTACACGGCCT

TCGATGCTGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATGTGGCTGTGTGTAGCTTGGATTAAC
TATATATACCTACAAAGCAAAAAGGGACCATTGGAGGAGGGGGAAGATCT
CTAGGAAGGTGAGCACAAGGGTGTTAAGGAGATGCTAGGAGATGGGAGAA
AACTTAACTGAGGACGGATAGCAGGGTAATCAGCATATGAGAAAGGGAGA
AATAATTTATAATACGAACGGTGTTTGAGAATCCATAGAGAACCGTTAGG
TTATATGATTACTTTGAAATACATTTTTTTTGTACATACCGACATGCATA
GATACATACATACATACAGTATACATATACACTGCGAGTACGGCGATCGC
CGCGCGGTGGGATAGTAGATCCGCCCCGAAAGCGGAGAGACTAGTTCGCG
CGTAGCGGGCGTCGTGAAGCGAAAGTTGCGCACTGACGTCGCGCGTTACG
GTAGACGGCAAGATCGTTCGCGCCGTACGACCGGCTAGGTACGCGGGCAT
GGTTCGTCGGTACTCGGTTTTTTTGTTCGTCGTTTTTTTGTTTTCTGTTT
TTTCGGATTCGTTCTTTTGTGCTTTCTTTCGTGGCCTTTCTCCGTTCCTT
TCCGTTTTTCGCTCAATCGTAGTTNTTTGTATTCTTCTTATTCCGTTTTT
TCGTCTCTCTTTTTTCGTCTCGGTTTTCTATTTTCGGTCATCTTTCGGTT
NCTTNCTTTCGACTTATCTCCTCTTTCTCTCTCAGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_i02.b1 MSMg01no400_i02.b1 CHROMAT_FILE:
MSMg01no400_i02.b1 PHD_FILE: MSMg01no400_i02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:50 2005
         (507 letters)



>mm_chr7_111445156_111446062
          Length = 907

 Score =  795 bits (411), Expect = 0.0
 Identities = 485/515 (94%), Gaps = 13/515 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaattctctgctactggcctcagatgctacct--------t-ttgt--tttgttagaaa 53
           |||||||||||||||||||||||||||||||||        | || |  |||||||||||
Sbjct: 756 ggaattctctgctactggcctcagatgctacctgatgacactgttattctttgttagaaa 697

                                                                       
Query: 54  accagtgcttgtttgcactttccaaattatttatgttaatgagcacagagactcatgcag 113
           |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 696 accagtgcttgtttgcactttccaaattatttatgtaaatgagcacagagactcctgcag 637

                                                                       
Query: 114 aggaggcagtacagggctgctaacagggctaaagacctcccgaaccatttgactgaactt 173
           ||||||||| |||||||| ||||||||||||||||| |||| |||| |||||||||||||
Sbjct: 636 aggaggcagcacagggctactaacagggctaaagacttcccaaaccttttgactgaactt 577

                                                                       
Query: 174 tgtagtattccaatgttccggtttctgataggggaaaatgggacatggaaatgtttttct 233
           |||||| ||||| ||||||  |||||||| ||||||||||||||||||||||||||||||
Sbjct: 576 tgtagtgttccagtgttccactttctgat-ggggaaaatgggacatggaaatgtttttct 518

                                                                       
Query: 234 tctaggaagcagtttattgtgcctgcatggaggctctggacattagtattcaaa-gccaa 292
           |||||||||||||||||||||| |||||||||| |||| ||||||||||||||| |||||
Sbjct: 517 tctaggaagcagtttattgtgcttgcatggaggttctgtacattagtattcaaaggccaa 458

                                                                       
Query: 293 attaaatgcaatggggcttctgtttgtctacaagtttggcttctgggtctcccatatatg 352
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 457 attaaatgcaatggggcttctgtttgcctacaagtttggcttctgggtctcccatatatg 398

                                                                       
Query: 353 gtgacataaaatgtgactgggtatcctaaactctcaggtcatggtaccaaggatgtgaag 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 397 gtgacataaaatgtgactgggtatcctaaactctcaggtcatggtaccaagaatgtgaag 338

                                                                       
Query: 413 agaagagggctgcctagggaacatgccaaggctccaaacatgttgactaaaccacagaga 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 agaagagggctgcctagggaacatgccaaggctccaaacatgttgactaaaccacagaga 278

                                              
Query: 473 cagctctcagttctctttttctttggcctctagaa 507
           |||||||||||||||||||||||||||||||||||
Sbjct: 277 cagctctcagttctctttttctttggcctctagaa 243


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space:   445809
Effective search space used:   445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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