Query= MSMg01no401_a20.b1 MSMg01no401_a20.b1 CHROMAT_FILE:
MSMg01no401_a20.b1 PHD_FILE: MSMg01no401_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:35 2005
(577 letters)
>mm_chr7_79288131_79289105
Length = 975
Score = 1065 bits (551), Expect = 0.0
Identities = 567/573 (98%), Gaps = 2/573 (0%)
Strand = Plus / Plus
Query: 5 gaattcagatctggactctcccttggttaaatgactctgaggggaaatgttttgatgtct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagatctggactctcccttggttaaatgactctgaggggaaatgttttgatgtct 264
Query: 65 ttcctgatgcaacaccagtgtactgctggtgactcagagttaatcacctattcacatcat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttcctgatgcaacaccagtgtactgctggtgactcagagttaatcacctattcacatcat 324
Query: 125 ccatgccctttccacatgctggcttacaggaacatgccaccacacctggctcattgctca 184
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 325 ccatgccctttccacatgctggcttacaggaacatgccaccacacccggctcattgctca 384
Query: 185 tagtcttcccatgttccttctctgaaaataacatcacttggatgtttgcatgtcatttac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tagtcttcccatgttccttctctgaaaataacatcacttggatgtttgcatgtcatttac 444
Query: 245 ggtccttatgtactttacattttttgattttttttttccatgtcacccaagcccgaaaac 304
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 445 ggtccttatgtactttacattttttgatttttttt--ccatgtcacccaagcccgaaaac 502
Query: 305 aatctccacactgtgcataaaggacaggcaacgtgcttgtaaagtacaaagcactaaact 364
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 503 aatctccacactgtgcataaaggacgggcaacgtgcttgtaaagtacaaagcactaaact 562
Query: 365 aaatgaaagaaaagatgcatccaatgagcagtaactgttggctctctatccccctgtaat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aaatgaaagaaaagatgcatccaatgagcagtaactgttggctctctatccccctgtaat 622
Query: 425 catcataatgcaaaggctacaatcagacaatacattactcattatacatttgtgccaaag 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 catcataatgcaaaggctacaatcagacaatacattactcattatacatttgtgccaaag 682
Query: 485 cctgtgattgaacaggtgaaagcctgatttggggaaatacattttccatcattagcagca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 cctgtgattgaacaggtgaaagcctgatttggggaaatacattttccatcattagcagca 742
Query: 545 agttctctactctcatctaagaagggggctaga 577
||||||||| ||||||| |||||||||||||||
Sbjct: 743 agttctctagtctcatcaaagaagggggctaga 775
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 975
Length adjustment: 10
Effective length of query: 567
Effective length of database: 965
Effective search space: 547155
Effective search space used: 547155
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no401_a20.g1 MSMg01no401_a20.g1 CHROMAT_FILE:
MSMg01no401_a20.g1 PHD_FILE: MSMg01no401_a20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:35 2005
(480 letters)
>mm_chr7_79463768_79464647
Length = 880
Score = 804 bits (416), Expect = 0.0
Identities = 422/424 (99%)
Strand = Plus / Minus
Query: 1 ctcagggtatggtagctttcagttgtaagggagagtagaggacgggaaatgtgtataaac 60
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 424 ctcaggatatggtagctttcagttgtaagggagagtagaggacgggaaatgtgtatgaac 365
Query: 61 aaaaggaacaagagattggaagaagcacgaaaagattgctctcagtgtataactgaacac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 aaaaggaacaagagattggaagaagcacgaaaagattgctctcagtgtataactgaacac 305
Query: 121 taattagctcaggtatctgggaaatctacctaagcaaacagctgtaacactctctgaagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 taattagctcaggtatctgggaaatctacctaagcaaacagctgtaacactctctgaagt 245
Query: 181 tcaaatagcaaccaggcagagatcaacacattacctatggaagagtcctagtcagggttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tcaaatagcaaccaggcagagatcaacacattacctatggaagagtcctagtcagggttt 185
Query: 241 ctgttgttcttgcaaaatgccatggctaaaagagacatgagaagaattttaatttaacct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 ctgttgttcttgcaaaatgccatggctaaaagagacatgagaagaattttaatttaacct 125
Query: 301 tacagcttataatctttaatgaaaggaagtcaaaccaggaactgaagcagaggccatgga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 tacagcttataatctttaatgaaaggaagtcaaaccaggaactgaagcagaggccatgga 65
Query: 361 agtgtactgcttactggattgctcaccatggactgctcagtccgttttcttacactccag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 agtgtactgcttactggattgctcaccatggactgctcagtccgttttcttacactccag 5
Query: 421 gacc 424
||||
Sbjct: 4 gacc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space: 408900
Effective search space used: 408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
