BAC Information

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BAC

Clone NameMSMg01-401N06
Chromosome7 (Build37)
Map Location 117,344,110 - 117,344,612
singlet/doubletsinglet
Overlap genenone
Upstream geneStk33, EG668320, 1700095J03Rik, Trim66, Rpl27a, St5, LOC100042582, D930014E17Rik, BC051019, Ascl3, Tmem9b, 4930431P19Rik, Nrip3, Scube2, Phxr5, Rab6ip1, Tmem41b, Ipo7, AA474408, Zfp143, Wee1
Downstream geneSwap70, EG668368, Sbf2, LOC668246, Adm, B430319F04Rik, Ampd3, Rnf141, Xlkd1, Mrvi1, Ctr9, Eif4g2, LOC100043221, LOC100042658
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401N06.T7 (MSMg01no401_n06.b1)MSMg01-401N06.TJ (MSMg01no401_n06.g1)
ACCAG501120AG501121
length752751
length of high quality
(start - end)
160 (371 - 530)504 (80 - 583)
definitionCHROMAT_FILE: MSMg01no401_n06.b1 PHD_FILE: MSMg01no401_n06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:33 2005CHROMAT_FILE: MSMg01no401_n06.g1 PHD_FILE: MSMg01no401_n06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCTTATATTTGCGGCGCTAAACGAANCCTATTCGTACCTCAGCGCGCG
GAANNCNNTGCTTTCANCACCAATGTTGGNTCACCTTACATTGCGTAGCT
GAGATCCGTTTGCCTTGACTCCATACAGAAAGAACACCAAAAAACTTCTG
GTGGTGTTCTGTCAGCTTCTTGTTGATTCTGTGGACTTGGGTGAACTGGC
CGAGTGAGGTTAGCTGATATAGACTCACGTGCTAAGGCAAGACCTGTGGT
TTATATGTGATGTTTGAAGGGAGTATAAATAGCACTCAACAGACAGTGAC
AGGGGCGGGNTTGCTTAGCTAAGTTTGCAANACTTTGNTAGNCTTGAGNC
TTCACTATTAGGGGCCTGGCAGAGAACTTCTCCTGATGTCCAAGCTGGTC
CTAGTCTCCCCTGCTGACTCATGCCGATTAGGCTGAGGCCTAGCTGTTTC
TTCTGGATCATGCCACCGATGCTGATTCACGTTTGCTATCCCAACACTAC
TAAACTGGACTGCTGGTATTTTTGTGAAGCGCTTTTGAGTGGATAGACTT
GCCACTGCTGACTCCTGTTAACTGAACTGTCTACACACATGCCATTTCGC
TCCAAGAATAATTTCCAAACAGGTCCATTTTCCCTCCGTGACCTAATAAT
AATTTTTTTTTTTTCATTACCACCCTGCGAATTGCTGTCGCCATACTTGT
ACTCTATCTATCTCTTCGTACCTTTTTTTTCCCTTCTATTCTCCTTACAC
TT
TTCCCAATGATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAATGTCACACAATTGTAGA
AATTATTTGCAGCTGGCAAAACTATCTGCAGCTAGCAAAACCATGCCTCT
GCTAGAGCACGAGGCAAATCATAGTCAGCTGCTGTGGTCAGTTCAAAGCA
GCTCCATATCCCCACACCTGGGATTAAAATGAAAACATGTTCTTATAATA
TTTCTGTGTTTTTTAAACAAATCAAAATTTCAAAATTGTCATTACATTCC
TGGCACCTCCCCCCACCCCCCTCTGTTTTCAATCCCATTTAACTTCCTAT
TTAGGTTGGCTTTTTTTTTTTTTTTTTTTTTGACAGGGTCTTTACTGTAA
GGCCAGGCTGGCTTCAGATTCACACTCCTTTTGTTTGACCTCCAGAATAC
TGGGATTATAAGTTTGCTCCACCACATCTGGCTTTCCCGTCTTCCATATT
AGTGCATTCCTGGATGCTGCCTAAATGTATGACAGACTTAAAAAATGTTT
TCAGAAGACCTATTTATTCTATTTATTTTATTTGTATGTGTGCAAGTGTT
TTGCCTGTATGTATGTTATGTATGTGTATCATGTATGTGCCTGGTAACTG
AAAAGGGCATAATAATGTACTGGGGTCCCCGGAAAATGACTCCCAGATGG
TTATGAGTCTACATAATGGAAGTTGGGAGTCCCAGCTAGGCCTTTATAAG
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_n06.g1 MSMg01no401_n06.g1 CHROMAT_FILE:
MSMg01no401_n06.g1 PHD_FILE: MSMg01no401_n06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:33 2005
         (504 letters)



>mm_chr7_117343909_117344812
          Length = 904

 Score =  959 bits (496), Expect = 0.0
 Identities = 502/504 (99%), Gaps = 1/504 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaatgtcacacaattgtagaaattatttgcagctggcaaaactatctgcagctagcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 caaatgtcacacaattgtagaaattatttgcagctggcaaaactatctgcagctagcaaa 261

                                                                       
Query: 61  accatgcctctgctagagcacgaggcaaatcatagtcagctgctgtggtcagttcaaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 accatgcctctgctagagcacgaggcaaatcatagtcagctgctgtggtcagttcaaagc 321

                                                                       
Query: 121 agctccatatccccacacctgggattaaaatgaaaacatgttcttataatatttctgtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 agctccatatccccacacctgggattaaaatgaaaacatgttcttataatatttctgtgt 381

                                                                       
Query: 181 tttttaaacaaatcaaaatttcaaaattgtcattacattcctggcacctccccccacccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tttttaaacaaatcaaaatttcaaaattgtcattacattcctggcacctccccccacccc 441

                                                                       
Query: 241 cctctgttttcaatcccatttaacttcctatttaggttggcttttttttttttttttttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cctctgttttcaatcccatttaacttcctatttaggttggcttttttttttttttttttt 501

                                                                       
Query: 301 ttgacagggtctttactgtaaggccaggctggcttcagattcacactccttttgtttgac 360
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 t-gacagggtctttactgtaaggccaggctggcttcagattcacactccttttgtttgac 560

                                                                       
Query: 361 ctccagaatactgggattataagtttgctccaccacatctggctttcccgtcttccatat 420
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctccagaatactgggattataggtttgctccaccacatctggctttcccgtcttccatat 620

                                                                       
Query: 421 tagtgcattcctggatgctgcctaaatgtatgacagacttaaaaaatgttttcagaagac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagtgcattcctggatgctgcctaaatgtatgacagacttaaaaaatgttttcagaagac 680

                                   
Query: 481 ctatttattctatttattttattt 504
           ||||||||||||||||||||||||
Sbjct: 681 ctatttattctatttattttattt 704


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)