BAC Information

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BAC

Clone NameMSMg01-402I09
Chromosome7 (Build37)
Map Location 96,191,677 - 96,191,923
singlet/doubletsinglet
Overlap genenone
Upstream geneGrm5, Ctsc, LOC100039756, Rab38, LOC100039924, LOC666598, EG621562
Downstream geneTmem135, LOC100039969, Fzd4, Prss23, LOC100040001, Me3, Ccdc81, l7Rn6, Eed, E230029C05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402I09.T7 (MSMg01no402_i09.b1)MSMg01-402I09.TJ (MSMg01no402_i09.g1)
ACCAG501650AG501651
length774773
length of high quality
(start - end)
244 (70 - 313)243 (70 - 312)
definitionCHROMAT_FILE: MSMg01no402_i09.b1 PHD_FILE: MSMg01no402_i09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:26 2005CHROMAT_FILE: MSMg01no402_i09.g1 PHD_FILE: MSMg01no402_i09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTTGGAGTGCCGCAGATAGTCTACAGATGCATTGTGTTCTTCTGGGT
GAAGTGTGACACCTGCTGGCTTGTAATAGGGAAAACATAGACTTCACTTA
GAAATTTACCTGGGGATATTCCAATAAAAAGGGCTTCTAGACAGATATTG
TTATTTCTTAGTGAGACACTGGGCAACTTCAAAGTTTGATGACCTTATCC
AGATTCAAGCTCCATGGCTAAACTTATTCCTAGAACCTGAAAGAACAATG
GAAGTATCCAGAGATTATTTCATCATGGTAGAAAGGTACCATAGAAAGAA
AGCTGGGCACAAAAATGTCTGCCTTCAGATCAGTATCTGTCTCTTTGTGC
TCAAAGAGCATTCAACAGATTGCATCTTCTGTTTCATTGCCATCATTATT
CTTGGTCTATGTTCTCTTCACCCTACTTTTCAGTTTGATGTGCTATAGTA
CCACAGTTCTACTCGAAGTGACTTATTATGCATTTATACCGTCCGGATCT
TTTTCCCGTTCAATATGTACTACTATAGCTTTCCGCGCAGGGTGTTCTAT
TACGTCCACTTGACCTCTCGATCGCCCCCTTGGCTCATTTTTTATCGTGT
CCCACGCTTTTATCTGTCAAACGCATTTGACCCGCCACTCTATTACCCTC
CCCCCTTTCCCCTCTTTTGTTTTTCCCTCCGCGGATATTCCCTTTACACG
TGCATTATTTCTACTTGTTTTTTT
TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTTTCTTAGTGTTTTTATAATTCTTTTTAT
TTTTAAGCATGGCTGCACTGGCTAGTTTATGTCATCTCAACACAAGCTAG
GGTCCCTGGAGAGGAGGGATCCTCAGTTGAGAAAATGCCTCGTTTGGACT
ATATGCAGAATTTTTAGGGCATTGGGTGAGTGAGACCACCTCTGAGCAGA
TGGTCCTAGGTTTTATAAGAAAGCCAGCTGAGCAAGCTATGATAGCAAGC
CGCTAAGCAGCACTCTTTTTCCTAAGGCCCGTGCATCTGCTTCTGCCTCG
AAGATCCTGCCCTGCTTCAGGTCTTGTATTGACTTCCTTTGTTGATGAAC
TGTGATGTGGAAGCTGAAGTGGTTATGGTGTTTCATCACAGCTACAGTAA
CCCTAAGAGAATGGGATTCTTATTATATTGTCTAGTGTATTCTCAAAATG
CTTGGTTCAAATAATGCTCTTGTTTCAGCTTTCTGTACTTATCAACCGCA
TCTTGATCTTCTTTGTTACACATTCCCTGACATTTATATGGCTTAATCTT
TTTTGGCCATTTGTCTGTTCTTTTCTTTTTCCTCTTTCTCTCTTCCCGTT
CGCCTTGTTTTTTTGTACCGCTCCCTGTCTCTAACGCATACTATTTTTCC
ACCATTTTCTCCCGTCTTGGCCCCTTAAATTCCTTATATCTCCTCGGCGC
CCTGTTTTCCTTATCCTCTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_i09.b1 MSMg01no402_i09.b1 CHROMAT_FILE:
MSMg01no402_i09.b1 PHD_FILE: MSMg01no402_i09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:26 2005
         (244 letters)



>mm_chr7_96191477_96192123
          Length = 647

 Score =  455 bits (235), Expect = e-132
 Identities = 243/247 (98%), Gaps = 3/247 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagtctacagatgcattgtgttcttctgggtgaagtgtgacacctgctggcttgtaatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagtctacagatgcattgtgttcttctgggtgaagtgtgacacctgctggcttgtaatag 260

                                                                       
Query: 61  ggaaaacatagacttcactta---gaaatttacctggggatattccaataaaaagggctt 117
           |||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaaaacatagacttcacttaatagaaatttacctggggatattccaataaaaagggctt 320

                                                                       
Query: 118 ctagacagatattgttatttcttagtgagacactgggcaacttcaaagtttgatgacctt 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctagacagatattgttatttcttagtgagacactgggcaacttcaaagtttgatgacctt 380

                                                                       
Query: 178 atccagattcaagctccatggctaaacttattcctagaacctgaaagaacaatggaagta 237
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atccagattcaagttccatggctaaacttattcctagaacctgaaagaacaatggaagta 440

                  
Query: 238 tccagag 244
           |||||||
Sbjct: 441 tccagag 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 647
Length adjustment: 9
Effective length of query: 235
Effective length of database: 638
Effective search space:   149930
Effective search space used:   149930
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)