BAC Information

Click to search

BAC

Clone NameMSMg01-402L12
Chromosome7 (Build37)
Map Location 63,100,483 - 63,100,726
singlet/doubletsinglet
Overlap genenone
Upstream geneLuzp2, LOC668796, Siglech, Tubgcp5
Downstream geneCyfip1, Nipa2, Nipa1, LOC672959, Herc2, p, LOC100040839, Gabrg3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402L12.T7 (MSMg01no402_l12.b1)MSMg01-402L12.TJ (MSMg01no402_l12.g1)
ACCAG501800AG501801
length754751
length of high quality
(start - end)
244 (67 - 310)513 (74 - 586)
definitionCHROMAT_FILE: MSMg01no402_l12.b1 PHD_FILE: MSMg01no402_l12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:43 2005CHROMAT_FILE: MSMg01no402_l12.g1 PHD_FILE: MSMg01no402_l12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTAATTTGCGGCGCTAAACGACNCACATTTGCAGAAATCCGCGGAATTC
CAGCTGTGACCAATAAGTGAAAATGTATAACACTTGGAATGCAATCGGTG
TTACAGAAACTCCGATTCAAACAAAAGAGGCTAAAGTCGGGGCAGAATGC
TTCAGTACACATACAGTTGTATATACTTCTGAACTATTTAAAAAATTGTT
GAGGTGGTATTTGTAAATTTTCTCACCTTTAAAAGTACTATTTCAGGCTA
GGTTGTATCTTATTTCTGTAATGTCAGCACTCAAGGAGCTGAGATAGACA
GGAAAGGTGGTGTTTTTCTCACCTCCAGTCTTAGCACTCAGAAGGTGGAG
GCAGGAGAATCAGGGGTTCAAGCCCACCAGGACTTCGGGAGACCCAACCT
CAAGCCCCTTCCCCTCCCTACACACAAAAAGGCTAATGTAGAGGCACCAT
GAATTCAAGGCTGTCTGGGCCATGGAATGAAACCCTGTCTCAAAACTCAG
GAGGGGTAAAGATGGCTCTTCAATTAGGAGCTTTTCAGGAGAACCTATGC
TGAGTTCCCAGCACCCACATGGAAGCTCACAATAGCCTATATCTCCTGGT
CCAAGAGATCCAATGGCGTCTTCTAGTCTCTACAGACTTCTGATGATTGT
GATGCACACTAACTCCTGTAGGCCACAACTACCCCACCCCTTGTCCAATA
CATATTTTAAATTTTGCTTTTTTCTTGAAACGGTAAGATAAAGGGTAAAG
ATAG
CGATGCACTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTAACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAATCACTCTGGAAATC
AGTCTGGCGGTTCCTCAGATAATTGGACATAGTACTACCGGAGGATCCAG
CAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAG
GACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAG
CTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGA
AGTAACACATTTCCAAAGGAACTCACACCATATGTACTCACTGATAAGTG
GATATTAGCCCCACAACCTATGATACCCCAGATATAAGATACAATTTCCT
AAACACCTGAAACTCATGAAAAATGGAAGATTGAAGTGTGCACCTTATGT
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_l12.b1 MSMg01no402_l12.b1 CHROMAT_FILE:
MSMg01no402_l12.b1 PHD_FILE: MSMg01no402_l12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:43 2005
         (244 letters)



>mm_chr7_63100283_63100926
          Length = 644

 Score =  456 bits (236), Expect = e-133
 Identities = 242/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgaaaatgtataacacttggaatgcaatcggtgttacagaaactccgattcaaacaaaa 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtgaaaatatataacacttggaatgcaatcggtgttacagaaactccgattcaaacaaaa 385

                                                                       
Query: 61  gaggctaaagtcggggcagaatgcttcagtacacatacagttgtatatacttctgaacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gaggctaaagtcggggcagaatgcttcagtacacatacagttgtatatacttctgaacta 325

                                                                       
Query: 121 tttaaaaaattgttgaggtggtatttgtaaattttctcacctttaaaagtactatttcag 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttaaaaaattgttgaggtggtgtttgtaaattttctcacctttaaaagtactatttcag 265

                                                                       
Query: 181 gctaggttgtatcttatttctgtaatgtcagcactcaaggagctgagatagacaggaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gctaggttgtatcttatttctgtaatgtcagcactcaaggagctgagatagacaggaaag 205

               
Query: 241 gtgg 244
           ||||
Sbjct: 204 gtgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)