BAC Information

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BAC

Clone NameMSMg01-402N21
Chromosome7 (Build37)
Map Location 103,139,767 - 103,293,093
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666823, Frda-ps
Downstream geneEG666836, Odz4, LOC670727, LOC666858, Nars2, Gab2
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402N21.T7 (MSMg01no402_n21.b1)MSMg01-402N21.TJ (MSMg01no402_n21.g1)
ACCAG501913AG501914
length727741
length of high quality
(start - end)
542 (62 - 603)513 (80 - 592)
definitionCHROMAT_FILE: MSMg01no402_n21.b1 PHD_FILE: MSMg01no402_n21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:55 2005CHROMAT_FILE: MSMg01no402_n21.g1 PHD_FILE: MSMg01no402_n21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,292,563 - 103,293,093)(103,139,767 - 103,140,279)
sequence
NNAATTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXATTTTCCCAACAAGAGCCTTCAAGTCCGGAAAACCAAGC
CTAAGCCTAGCTTGGTTATTTCCTAGGTGGCCATAGACAACAGCGTAGCT
GGTCTGCACCTTACTTCATCAGTAGCAATGGGAGAAGTACTGAATGCATA
GAAAACACACTGCACAATGCCTGGCATAGTCTCCAAGCAGTTAGCTTTGC
TTGTTCTGACATCCTTTGACACCGGAGTGGGACAGAGCTACCCCAGCCTG
AGCAAAGTGGGGAAATCAGTTGTACTGGGAAGCCTGAAGTACAAGATGAA
GGAGTGAAAAGTCCACACCTGGCACTGAGCAGCAAGAATCACGAATTAGG
GAAGAGTGCACTGTTAAAGTCCTCTGCATTGAAGACTTTGTCCCCAACTG
TTGTTGCTACTAGGAGGTTGTGAAAGTAATGGAAATTTTAGGTGGCAAGG
ACCAGAGTCAAGAGGCAGGTCAGGTGGAGTGTACCCTTGTAGGATATACT
GGGAGGCCAGCCCTTCTGTTTCTCTTTCCTCCCTGGTTGCATGGGATGAG
CGGGTTCTTGTGCCACATGCTTCCTACCATGATGTAGAGCTTGCTCTCTG
TTTCTTAGCCAATTGGTCCAGTGAGTATGGATCTAAACTTCTGCATTCTT
TGAGTCAAATATAAACTTTTCCTCCTT
CTCCGAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCATCACCACACCTCACGTGT
CAGTGCCCACGGCCTCCTGAGACTACAAAAGCTTCCCCTCTGCTATCTGG
AGCCACCGCACGTCGGAAAGCATTTTGTCCCATTTGTCCAGGGACAGGCG
CATGGGAAAATGCCACTCAATTAAGCCCTTTTGGGTTTCCTTAGAGCTCT
TGCCAAAATCATAATTGCATATTAATTTGCAACTCAAGTGAGTTTTCCTA
ATTGCAGCTAGGGGAGGGGGTCGAGGACCCACGTGTGTATCAGAGGGAAG
ACAAGATGCTGCTGCCTAATGAGCCTCTGTAGGAAAAGGTCAAGGTTAAA
GGCTTGCTTCATCAATCCTTAAAGGTCTGATGGGGGTGGTGAACTCCCAT
TGGAATTGAGCTCATTTTCATATGTATACACTCTAGGAAATAGGATTGAG
GGGGCGGATCTGAGCATACACAAGACACTTCCCACCACAGTCCCAGAGTG
GAAAATGGAGTGCAAGCCACACCCTCTGTCTTACCTTCTCTTGCTCAGTC
AGGTTTACATCCTATCATCTGTAGAATGGGAATGAGAATTTGCCAACGAA
TGGATTCAAATTAAATGGATCATGTAAAATTCCTCACCCCACATGTAGCA
AATTAAGGAGCCTAATAAATGACAGGCTGCTATTTTTATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_n21.b1 MSMg01no402_n21.b1 CHROMAT_FILE:
MSMg01no402_n21.b1 PHD_FILE: MSMg01no402_n21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:55 2005
         (542 letters)



>mm_chr7_103292355_103293296
          Length = 942

 Score = 1004 bits (519), Expect = 0.0
 Identities = 528/531 (99%)
 Strand = Plus / Minus

                                                                       
Query: 9   aacaagagccttcaagtccggaaaaccaagcctaagcctagcttggttatttcctaggtg 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 aacaagagccttcaagtccggaaaaccaagcctaagcctagcttggttatttcctaggtg 680

                                                                       
Query: 69  gccatagacaacagcgtagctggtctgcaccttacttcatcagtagcaatgggagaagta 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gccatagacaacagcgtagctggtctgcaccttacttcatcagtagcaatgggagaagta 620

                                                                       
Query: 129 ctgaatgcatagaaaacacactgcacaatgcctggcatagtctccaagcagttagctttg 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ctgaatgcatagaaaacacactgcacaatgcctggcatagtctccaagcagttagctttg 560

                                                                       
Query: 189 cttgttctgacatcctttgacaccggagtgggacagagctaccccagcctgagcaaagtg 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 cttgttctgacatcctttgacaccggagtgggacagagctaccccagcctgagcaaagtg 500

                                                                       
Query: 249 gggaaatcagttgtactgggaagcctgaagtacaagatgaaggagtgaaaagtccacacc 308
           | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gagaaatcagatgtactgggaagcctgaagtacaagatgaaggagtgaaaagtccacacc 440

                                                                       
Query: 309 tggcactgagcagcaagaatcacgaattagggaagagtgcactgttaaagtcctctgcat 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tggcactgagcagcaagaatcacgaattagggaagagtgcactgttaaagtcctctgcat 380

                                                                       
Query: 369 tgaagactttgtccccaactgttgttgctactaggaggttgtgaaagtaatggaaatttt 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tgaagactttgtccccaactgttgttgctactaggaggttgtgaaagtaatggaaatttt 320

                                                                       
Query: 429 aggtggcaaggaccagagtcaagaggcaggtcaggtggagtgtacccttgtaggatatac 488
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aggtggcaaggaccagagtcaagaggcaggtcaggtggagtgtacccttgtaggatatac 260

                                                              
Query: 489 tgggaggccagcccttctgtttctctttcctccctggttgcatgggatgag 539
           ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 259 tgggaggccagcccttctgtttctctttcctccctggctgcatgggatgag 209


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no402_n21.g1 MSMg01no402_n21.g1 CHROMAT_FILE:
MSMg01no402_n21.g1 PHD_FILE: MSMg01no402_n21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:55 2005
         (513 letters)



>mm_chr7_103139567_103140479
          Length = 913

 Score =  984 bits (509), Expect = 0.0
 Identities = 512/513 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccatcaccacacctcacgtgtcagtgcccacggcctcctgagactacaaaagcttcccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccatcaccacacctcacgtgtcagtgcccacggcctcctgagactacaaaagcttcccct 260

                                                                       
Query: 61  ctgctatctggagccaccgcacgtcggaaagcattttgtcccatttgtccagggacaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgctatctggagccaccgcacgtcggaaagcattttgtcccatttgtccagggacaggc 320

                                                                       
Query: 121 gcatgggaaaatgccactcaattaagcccttttgggtttccttagagctcttgccaaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcatgggaaaatgccactcaattaagcccttttgggtttccttagagctcttgccaaaat 380

                                                                       
Query: 181 cataattgcatattaatttgcaactcaagtgagttttcctaattgcagctaggggagggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cataattgcatattaatttgcaactcaagtgagttttcctaattgcagctaggggagggg 440

                                                                       
Query: 241 gtcgaggacccacgtgtgtatcagagggaagacaagatgctgctgcctaatgagcctctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcgaggacccacgtgtgtatcagagggaagacaagatgctgctgcctaatgagcctctg 500

                                                                       
Query: 301 taggaaaaggtcaaggttaaaggcttgcttcatcaatccttaaaggtctgatgggggtgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taggaaaaggtcaaggttaaaggcttgcttcatcaatccttaaaggtctgatgggggtgg 560

                                                                       
Query: 361 tgaactcccattggaattgagctcattttcatatgtatacactctaggaaataggattga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaactcccattggaattgagctcattttcatatgtatacactctaggaaataggattga 620

                                                                       
Query: 421 gggggcggatctgagcatacacaagacacttcccaccacagtcccagagtggaaaatgga 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 621 gggggcggatctgagcatacacaagacacttcccaccacagtcccagagtggaaaatgta 680

                                            
Query: 481 gtgcaagccacaccctctgtcttaccttctctt 513
           |||||||||||||||||||||||||||||||||
Sbjct: 681 gtgcaagccacaccctctgtcttaccttctctt 713


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)