BAC Information

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BAC

Clone NameMSMg01-402O03
Chromosome7 (Build37)
Map Location 30,495,362 - 30,495,534
singlet/doubletsinglet
Overlap gene1700067C01Rik
Upstream geneFbxo17, Mrps12, Sars2, EG624918, Nfkbib, Sirt2, 5830482F20Rik, Hnrpl, Ech1, Lgals4, Lgals7, Capn12, Actn4, Eif3s12, Map4k1, Ryr1, Rasgrp4, 1110006G06Rik, Spred3, Ggn, Psmd8, A230107C01Rik, Kcnk6, Yif1b, Spint2, Ppp1r14a, Neud4, Sipa1l3, LOC100043791, 4932431P20Rik, 4930432E11Rik
Downstream geneZfp84, LOC100043794, Zfp30, EG625349, 6330581L23Rik, BC027344, Zfp420, Zfp27, Zfp74, LOC625437, LOC100043796, Zfp568, Zfp14, LOC100043798, Zfp82, Zfp566, Zfp260, Zfp382, Zfp146, EG330503, Cox7a1, Capns1, Tbcb, Polr2i, Ovol3, Wdr62, EG668354, 1700020L13Rik, Clip3, Alkbh6, AI428936, 0610010E21Rik, Lrfn3, Tyrobp, Hcst, AY078069, Aplp1, Kirrel2, Nphs1, LOC100034728, Prodh2, Gm1082, Snx26, BC053749, Hspb6, 1810054G18Rik, Psenen, U2af1l4, Tmem149, Wbp7, Zbtb32, Upk1a, Cox6b1, Etv2, 3100004P22Rik, 2310022K01Rik, 4930479M11Rik, 2200002J24Rik, EG233075
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402O03.T7 (MSMg01no402_o03.b1)MSMg01-402O03.TJ (MSMg01no402_o03.g1)
ACCAG501925AG501926
length798811
length of high quality
(start - end)
32 (155 - 186)175 (71 - 245)
definitionCHROMAT_FILE: MSMg01no402_o03.b1 PHD_FILE: MSMg01no402_o03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:56 2005CHROMAT_FILE: MSMg01no402_o03.g1 PHD_FILE: MSMg01no402_o03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:57 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TATATTTGCGGCGCTAAACGACTCCTATATTCCGCACTCCGCGGAANCAA
CNCCGTTTCTGCTACTAGGAGNCAAGGCCAGGGAATACAGGAGACCCTGA
CTCAAATAGAAGGTCAGGAAACGGTTTATATGTTCCTGCTGCCAATCCTG
ATAGTCTGAGCTCAATTCCCAGAGCCCTCGTGGTGGAAGAAGAGAACTGA
CTCCCGAAAGTTGTCCTGTACCCTCCACTGCACACTTTTTTTCACTCTCA
TTTTACAGTAAATCGTACTCATCACTTTTCCTCCTACTGTCTGCACCAGG
GAACCTTTTTTTTTTTTCCCAGCCCCGCGCCAAAAGCCAAGAAACGCGCA
CGTTTTTTTTCGCCTTTTTATTTTGATGGTATTCTTCCTTCTCGATATCT
TGTTTTTTAAGCTTTTTCATTGTTTTTTTACTGTCCCCACGATCTACTGC
AACTACTCTTGCCCTTTTCTGCCTTCTTATCTTTCTCGCGTCCTCACTCT
TTGCGACATGCCCCCCCCTTCCTCTCCCCTTTTCCTGTGTCCCACCTTCC
TCCCTCTTATTTCCTCTTTCCTCCTTTTTTCTCTTCTTTTCCCCTCCCCC
CTTGTAACTTTCTTTCTTCTTTCCTCCCGCCCACCCCCCCTTTTTTCGTC
TTTTTCCTTTTTTTTCTCTTTTTTTTCCTTTTCTCCTCCTCTTTCTCCCG
CCCCTTTTTCCGCTCTCTCCTCCTTTTCACCCACATTTTTTATTTTCACC
TCTCTTGTCTCCTCTCTTTCTCTTTCCTCTCCTCTCTTTCTTATATTC
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATTTTTCTGGCAGACTTTCCCAAGGAGTCC
ACCATCAAATACATGGTCAACTCTTTCAAAGGACAAATGGCTGTTGTCAC
AGAAAATGAAGAGGTGAGATACCCTGTCTTTCTCCCTCAGCCCTCCTTGT
TCATCTCCAAATCTTCCTGCCCTGTCAGGGTGAACACCCTTCATGGACCC
CAAAATAAAGGTCAGTTATAAGGCGCTACCTCTAACAGGGTCCTGGAACT
CAGAGGGTATGGCGGACTTTTTCTAAGAGTACACATCCTTGTAAGGACTC
AGTGTAGTGGGAGAGTAGGAAGGTTTCCCTTGTTCCTGAAGACTCATATA
TATGCTGCTGGATCCACAGATCTGGTACTTTCTGGAGCTTGGCTATGATG
CATACCCACGTGCTCCCCTCCCAAGGCCGGTAAATCTACCTTAACTTGCT
CAAGATGTCTAAATCTTTCCTTCTTATTCTATAATTACTCCCTTGTACTC
TCCTCTTTCTTTTCATATTCCTAAGCTTTTTCCCCCCTTCTCTACACCTT
TTTGCTCACTTCCCATCTTTGTCCACCCTATTTATAAAGCTCATCTCTAT
TCTCTTCTTATTCCTTCACCCCCTCCCTTTCTCTTTCCCCCCCCCCAATC
ACACTCTCCTTCCTCACAACTTTCCTTCCCACATCCTCTTCTCCCTCTTC
TCATCCTTTCCTTCTCTCTGTCTCTCCATCCTCCTCTTCTCACTCTTCCC
CCCCCTTTCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_o03.g1 MSMg01no402_o03.g1 CHROMAT_FILE:
MSMg01no402_o03.g1 PHD_FILE: MSMg01no402_o03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:57 2005
         (175 letters)



>mm_chr7_30495162_30495736
          Length = 575

 Score =  335 bits (173), Expect = 1e-96
 Identities = 173/173 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttttctggcagactttcccaaggagtccaccatcaaatacatggtcaactctttcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 atttttctggcagactttcccaaggagtccaccatcaaatacatggtcaactctttcaaa 314

                                                                       
Query: 61  ggacaaatggctgttgtcacagaaaatgaagaggtgagataccctgtctttctccctcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ggacaaatggctgttgtcacagaaaatgaagaggtgagataccctgtctttctccctcag 254

                                                                
Query: 121 ccctccttgttcatctccaaatcttcctgccctgtcagggtgaacacccttca 173
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ccctccttgttcatctccaaatcttcctgccctgtcagggtgaacacccttca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 175
Length of database: 575
Length adjustment: 8
Effective length of query: 167
Effective length of database: 567
Effective search space:    94689
Effective search space used:    94689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)