BAC Information

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BAC

Clone NameMSMg01-402P21
Chromosome7 (Build37)
Map Location 103,639,077 - 103,639,594
singlet/doubletsinglet
Overlap geneOdz4
Upstream geneFrda-ps, EG666836, LOC670727, LOC666858
Downstream geneNars2, Gab2, LOC100040457, Usp35, EG622320, Alg8, Ndufc2, Thrsp, Kctd14, Ints4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402P21.T7 (MSMg01no402_p21.b1)MSMg01-402P21.TJ (MSMg01no402_p21.g1)
ACCAG502008AG502009
length706736
length of high quality
(start - end)
---518 (76 - 593)
definitionCHROMAT_FILE: MSMg01no402_p21.b1 PHD_FILE: MSMg01no402_p21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:06 2005CHROMAT_FILE: MSMg01no402_p21.g1 PHD_FILE: MSMg01no402_p21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATCTTATTTGTGCGTATACACTCACTATTTCAAGGATCCGGGATTCCAG
GTATACCTCTGATGACAGAATGTCCAGTCTTCCCGATCCTTCCTTGATCC
CACACAGCCCCAGCCCCAGCCCCAGTCTAGCCCCAGCCTAGCCCCATCTC
AGTCTAGCCCAGCCCAGCCCCAGTCTTGCCCCATTTCAGTCTTTTCTCAT
CTCTGCCTTTATTTTATAACTTATTTAGTTAATTTTACCTTCTTCCATAC
ATTTTTTTTATATTATTCTTCTTACAGCTTCTTTTTTTTTTTACCTCTTA
ACCTTCTGCATTTTTTTCCTTATTTTTTTACTTTTTTATTCCTTTTTTAT
CTTTTTTTTTGCTTTCTCTTTTTTGTTATCTTTCCTTTTCTTATATTTCT
TTTCTTTACTCTTTTTTTTTTTTTCTCTAATTTATTTTTCTTCTTTATTT
TCTTTTTTATTGTATTTTTTATTTTTATATCTTTTTTTATTCATTCCCTT
TTTTTTTTTTTTTTTTTATTTATTATCCTTCTTTTTTTTGTTTTACCTCT
TTATTTTTTTTTTTCTTCCTCTTTATTCTTTTTTTTCTTCCTCACCTACA
TTTTTTCTTTTCCTTTTTTTTTTTTTTCCTTCCCCATTTTTTTCCCTTTT
TTTTCTTTTATTACCTTTTTTATTTCTTCTTTTTAATTCTTCCTTTTTTA
TTTTTT
NAACGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAATCTCTCTAGTCCTTCTCAGCTTC
CAAAGCTCTTCAAGTCCACCACCGTTGTCTGTGAAAGTTGTCAGGAGACT
CAGGCAGATCTGGGGATGACAGACCATGGCACTGAAGTTCTTCCAACTTT
CTGGAGACCCCTGTGGAGAGGCAAATGAAAGCTGGGATCATTAAGAGAGG
CAAGCGATATGAACAGATCAGTGCACATGCCCAGGATGGGTGACAGAGCA
CTGTGGCAGGGAGCAAGTTTGCACATGAGGGCAATGTAGAAGTGTTAGTC
CTGGGCCTGGAACTCGGTGGGTGCTGGGTATACACTGCCTTCCTCCCCTC
ACTGTGAGAAGCACTTTTTTAGTTCATCTCCAGTTCCCTCATTTCACCTC
CTGTGTCAGTGGTTTGTGGGATTTGACTTGGTTAAGTGGGGAGTGCTTAG
AGTGGCAGGCAAGCTGTTATTGCTTTGACCTGAAACCCAGTCCCCTCTCT
TAGCTACAGATGACTCAGCTGGGAGACCTGTCTCTGCCCAGGCACCATGC
ATAAAACTGGAGAAGAAACCCTCCCAGGCTTTCTGGTGTTCTGCCCTTAG
CCCTGTCACATTCCATAGGACCTTGGTCAGATAGCCTTTGGCAGAACGAG
ATACTTTTGGTGACTGGGGTTTTGCCCAGTCAGTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_p21.g1 MSMg01no402_p21.g1 CHROMAT_FILE:
MSMg01no402_p21.g1 PHD_FILE: MSMg01no402_p21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:06 2005
         (518 letters)



>mm_chr7_103638877_103639794
          Length = 918

 Score =  963 bits (498), Expect = 0.0
 Identities = 513/518 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatctctctagtccttctcagcttccaaagctcttcaagtccaccaccgttgtctgtgaa 60
           ||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 aatctgtccagtccttctcagcttccaaagctcttcaagtccaccactgttgtctgtgaa 260

                                                                       
Query: 61  agttgtcaggagactcaggcagatctggggatgacagaccatggcactgaagttcttcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agttgtcaggagactcaggcagatctggggatgacagaccatggcactgaagttcttcca 320

                                                                       
Query: 121 actttctggagacccctgtggagaggcaaatgaaagctgggatcattaagagaggcaagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actttctggagacccctgtggagaggcaaatgaaagctgggatcattaagagaggcaagc 380

                                                                       
Query: 181 gatatgaacagatcagtgcacatgcccaggatgggtgacagagcactgtggcagggagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 gatatgaacagatcagtgcacatgcccaggatgggtgacagagcactgtggcaggtagca 440

                                                                       
Query: 241 agtttgcacatgagggcaatgtagaagtgttagtcctgggcctggaactcggtgggtgct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtttgcacatgagggcaatgtagaagtgttagtcctgggcctggaactcggtgggtgct 500

                                                                       
Query: 301 gggtatacactgccttcctcccctcactgtgagaagcacttttttagttcatctccagtt 360
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 501 gggtatacactgccttcctcccctcactgtgagaagtacttttttagttcatctccagtt 560

                                                                       
Query: 361 ccctcatttcacctcctgtgtcagtggtttgtgggatttgacttggttaagtggggagtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccctcatttcacctcctgtgtcagtggtttgtgggatttgacttggttaagtggggagtg 620

                                                                       
Query: 421 cttagagtggcaggcaagctgttattgctttgacctgaaacccagtcccctctcttagct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttagagtggcaggcaagctgttattgctttgacctgaaacccagtcccctctcttagct 680

                                                 
Query: 481 acagatgactcagctgggagacctgtctctgcccaggc 518
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acagatgactcagctgggagacctgtctctgcccaggc 718


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)