BAC Information

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BAC

Clone NameMSMg01-403B20
Chromosome7 (Build37)
Map Location 117,466,376 - 117,466,573
singlet/doubletsinglet
Overlap geneSbf2
Upstream geneStk33, EG668320, 1700095J03Rik, Trim66, Rpl27a, St5, LOC100042582, D930014E17Rik, BC051019, Ascl3, Tmem9b, 4930431P19Rik, Nrip3, Scube2, Phxr5, Rab6ip1, Tmem41b, Ipo7, AA474408, Zfp143, Wee1, Swap70, EG668368
Downstream geneLOC668246, Adm, B430319F04Rik, Ampd3, Rnf141, Xlkd1, Mrvi1, Ctr9, Eif4g2, LOC100043221, LOC100042658
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403B20.T7 (MSMg01no403_b20.b1)MSMg01-403B20.TJ (MSMg01no403_b20.g1)
ACCAG502102AG502103
length784773
length of high quality
(start - end)
---198 (204 - 401)
definitionCHROMAT_FILE: MSMg01no403_b20.b1 PHD_FILE: MSMg01no403_b20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:16 2005CHROMAT_FILE: MSMg01no403_b20.g1 PHD_FILE: MSMg01no403_b20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTGAAGTCTGCGAAACACTATTGAGGATAATGAGATCCAACTGCAGTGAG
GGACCTGAACATATATGGAAATGCCACGTGCCATATGTTGACCATCAAGA
GCAGCAGCCATAATGAAATGAAGCCTACTGGAGCCTATGGGGAAGGCTAT
ATAGGATGCTGGCCAGGGTGGAGCCAGAGAGTGACCTTGGTGCCTTTAGA
GGAACCCATAGGACCGCAAATGAATCCTGGATATTAAGCTCTGACTTATT
TACATTGCTAAAGTTTGGTCTTGTCTTGCCCAGATTATGATTGTGCCCTG
TTTCTTCTCTGTGAAGAGATATAACAGGGCTCCCAGAGGTGCCCTGAGAT
ATTCCTATCCTATGATGTATCAGGACAATAACCTAACCCCTGCACAGCAC
AGAGCCTATAGAATGTCCTTCCTTACTTAAAGTTTATTCTCGCTACCTGA
AATTAACTTAGTCTATACATGGGCACTTTGCGTCCTCCTCTTCTTCGTTC
TCTTTTTGTTTTAAGGATTTATCTATTATACCTTAGGCCCACTGGAAATT
GTCTTCGGACCCCACAATACGGCGTCATGAATCATTTACGTTTGGCTGGT
TACCCCCATGAGGAGTTGGGGCCTTGTAAATCCCAATCCCGGGGAATATT
TCCGTTTCTCTTTCTTTGAGCATTTTTCCCCTTTTCGCCCCCCCTTTCTT
TAATCATACCACTCCCCGTCTTACCTATTCTACG
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCTAATAGACAACTGTACCTTTCTTCCTCTGGA
CATGAAGACTTGCAATGGCCTCTGACTACTAGATGTTTGTTCCCATGTAT
GCTGAACTAGTTTGTCCTTGCAAGCTAATCCATCTAGACATACTGCAGTT
TCTGCCTCCCCAGGATTCAGGAAGCCAGGGTCCATCCTCAGCTCATCCCC
TTCACTGGCTACACAACTCTATGAATCACCAGGTCTCCGCATGTACACTA
ATTCCACCCAGAATCTTGAGCCAGAAAGCTTTGCTTGACATCAGAGGACA
GGTCAGGGAGGAAGCCTAAAGTCTGAATGCTGCCTGAGAGAGGAACCAGA
ATAGCTGGGTACAGAGCTGGCTGTAGTTCTATGGTCCTGTGTCTGCCCGC
TGTGCATGTTCTTGCATTTCCCACCTTTAACGATACTCATCCCCTGTTTG
TGTGTACCCTCCTCCTTCTTTTATTCCACTATCACACCCCGCTTTACCCC
CCTCCCTATACTCTTCACCTTTCGCCGCCTCCTCCCTCTCTCCTCCTTTG
TTTTTCTTTTCCTCCCCCCATCCCCTCCCGCCTTTTCCCACCTCTTTTTC
TTTCTTTTTCCGCCCCCCTTCTTTCCCCTTTTCCTCCCTTCCTTTCCCCT
CTTTTCTTTCTTCCTCCCCTTCCTTTCCCCCTTTTTTTCTTCCCTTTTCC
CCTCTTTGCCCTTCGTTTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_b20.g1 MSMg01no403_b20.g1 CHROMAT_FILE:
MSMg01no403_b20.g1 PHD_FILE: MSMg01no403_b20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:16 2005
         (198 letters)



>mm_chr7_117466176_117466773
          Length = 598

 Score =  383 bits (198), Expect = e-111
 Identities = 198/198 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcctccccaggattcaggaagccagggtccatcctcagctcatccccttcactggctaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gcctccccaggattcaggaagccagggtccatcctcagctcatccccttcactggctaca 339

                                                                       
Query: 61  caactctatgaatcaccaggtctccgcatgtacactaattccacccagaatcttgagcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 caactctatgaatcaccaggtctccgcatgtacactaattccacccagaatcttgagcca 279

                                                                       
Query: 121 gaaagctttgcttgacatcagaggacaggtcagggaggaagcctaaagtctgaatgctgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 gaaagctttgcttgacatcagaggacaggtcagggaggaagcctaaagtctgaatgctgc 219

                             
Query: 181 ctgagagaggaaccagaa 198
           ||||||||||||||||||
Sbjct: 218 ctgagagaggaaccagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 598
Length adjustment: 8
Effective length of query: 190
Effective length of database: 590
Effective search space:   112100
Effective search space used:   112100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)