Query= MSMg01no403_f21.b1 MSMg01no403_f21.b1 CHROMAT_FILE:
MSMg01no403_f21.b1 PHD_FILE: MSMg01no403_f21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:37 2005
(520 letters)
>mm_chr7_136332854_136333773
Length = 920
Score = 965 bits (499), Expect = 0.0
Identities = 511/515 (99%), Gaps = 1/515 (0%)
Strand = Plus / Minus
Query: 7 gaattctcaactttctgttctgctgccttgcctactgctcgccctcctgccagtgcagca 66
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 gaattctcaacttcctgttctgctgccttgcctactgctcgccctcctgccagtgcagca 814
Query: 67 -ggtgggctctcactcctctggaagcataagccaaaagaatcattccctatgagttgcct 125
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 gggtgggctctcactcctctggaagcataagccaaaagaatcattccctatgagttgcct 754
Query: 126 tggccatgtattttatcacagcaatggaaaagttggccatacttggaaacagggccttta 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 tggccatgtattttatcacagcaatggaaaagttggccatacttggaaacagggccttta 694
Query: 186 tgaaagtcattaaggcaaattgaagccatgggaatgaaaacctgatcagacaaaattcct 245
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 693 tgaaagtcattaaggcaaattgaagccatgggaatgaaaacctgatcagacaaaattcgt 634
Query: 246 gtcattcaaaaaggagagagaagaggtgtggtctgactgggagttaggcatactatgcac 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 gtcattcaaaaaggagagagaagaggtgtggtctgactgggagttaggcatactatgcac 574
Query: 306 agcagcaaaaacacatgaggagccatgttgttttcaatgaaaatacataaatgtgccagg 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 agcagcaaaaacacatgaggagccatgttgttttcaatgaaaatacataaatgtgccagg 514
Query: 366 gtctgtggattctctggtgggagcatagtttacattttgctaccatagaaagaagaaagg 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 513 gtctgtggattctctggtgggagcatagtttacattttgctaccatagaaagaaggaagg 454
Query: 426 atgggcttagtagaaggaagagacctaagactagctggcattttaagtagctgtgtgttg 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 atgggcttagtagaaggaagagacctaagactagctggcattttaagtagctgtgtgttg 394
Query: 486 actgcggctactgcagatgtggatttgcccggcaa 520
|||||||||||||||||||||||||||||||||||
Sbjct: 393 actgcggctactgcagatgtggatttgcccggcaa 359
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space: 464100
Effective search space used: 464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no403_f21.g1 MSMg01no403_f21.g1 CHROMAT_FILE:
MSMg01no403_f21.g1 PHD_FILE: MSMg01no403_f21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:38 2005
(429 letters)
>mm_chr7_136162454_136163283
Length = 830
Score = 795 bits (411), Expect = 0.0
Identities = 420/423 (99%), Gaps = 1/423 (0%)
Strand = Plus / Plus
Query: 1 acagacatccacctgcctctgagattaaaggtttgtgacaccatgccaggcaaagccttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagacatccacctgcctctgagattaaaggtttgtgacaccatgccaggcaaagccttg 260
Query: 61 ctttcttcagtataaacattacagaaatagcttcccttctaggcctcctttaaccatatc 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttctttagtataaacattacagaaatagcttcccttctaggcctcctttaaccatatc 320
Query: 121 ctgccagtctccatatgttgtcttttcattgctattcagttggaattcttgctaatttat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgccagtctccatatgttgtcttttcattgctattcagttggaattcttgctaatttat 380
Query: 181 ttgggataggtctgattcatggggcatataagagtgtctaatattgatatcaatgttatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgggataggtctgattcatggggcatataagagtgtctaatattgatatcaatgttatg 440
Query: 241 actgatatttgaatatctggttttttt-cattatatatttttcttactagtttgtttttg 299
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 actgatatttgaatatctggttttttttcattatatatttttcttactagtttgtttttg 500
Query: 300 ttaatatctaatttgaattcactgagtaatatattttataagatttgaatattttaaaat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaatatctaatttgaattcactgagtaatatattttataagatttgaatattttaaaat 560
Query: 360 gcattaaagctgattctatttgtttagtttacattccatacgcttcgaagttgctgattt 419
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 561 gcattaaagctgattctatttgtttagtttatattccatacgcttcgaagttgctgattt 620
Query: 420 cag 422
|||
Sbjct: 621 cag 623
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 830
Length adjustment: 9
Effective length of query: 420
Effective length of database: 821
Effective search space: 344820
Effective search space used: 344820
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
