BAC Information

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BAC

Clone NameMSMg01-403G04
Chromosome7 (Build37)
Map Location 13,324,314 - 13,324,768
singlet/doubletsinglet
Overlap genenone
Upstream geneV1rg2, EG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423, LOC628946, LOC100043075, LOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092, V1rg9, V1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606, 2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079
Downstream geneLOC629081, EG232875, LOC100043128, LOC100042515, Zfp329, Zfp110, Zfp128, Zscan22, Rps5, 2310014L17Rik, 1810019N24Rik, Zfp324, Zfp446, Slc27a5, ZBTB45, LOC100042553, Trim28, Chmp2a, Ube2m, Mzf1, V1rj3, LOC100043156, V1rk1, LOC666177, EG232887, V1rj2, 6330408A02Rik, Lig1, Pla2g4c, LOC666225, Cabp5, LOC666232, Gm767, LOC666243, 9230107M04Rik, EG666256, LOC666267, LOC100042624, LOC100043194
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403G04.T7 (MSMg01no403_g04.b1)MSMg01-403G04.TJ (MSMg01no403_g04.g1)
ACCAG502308AG502309
length764767
length of high quality
(start - end)
451 (68 - 518)377 (73 - 449)
definitionCHROMAT_FILE: MSMg01no403_g04.b1 PHD_FILE: MSMg01no403_g04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:39 2005CHROMAT_FILE: MSMg01no403_g04.g1 PHD_FILE: MSMg01no403_g04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGGAAT
TCCTAGGTTACCTAGTTCAGAGCCTTCAGGACTCAGAAAAGCATACCTTT
CCATTTTCTTCTTTTTCTCTTTTCCAATCATGCTTTCTCTACATTTTGGG
CTTTACTTTCTAAATCTCCCCTTTCCCACCATGTGGGTGACTGCTTGCCA
TTGTGGCTGACCCAGATGCCTAATGTTTCATACAGCATGGCTTGCTTTCT
TCCTCTTCTTTATCTCCCCTTTCTGGGAGGCTGGTGGGGTTCACAAGTTG
CTTGCTTTGGAGTTTTTCTTTTAAATAATAAAATTGTCCTAAAGTTTCTT
TTTGAGTCCATTCTTTAATTCACTTAATATGAAGACTAAGAACCTGTAGG
AGCAACTCCAATTTCCTCAGTAACATGTGGTGGCTTTGGTGGGATTCCCC
AATCTGGCAACAATGTGAGGTCCAAAAGGCTTTGACAGTTCTGTCTCAGT
GGTTTTTCTGGCTGCAGCCCACAACAGCCCTTTTCCTGTGATGGCTCTGC
CTGTTGCCTTTATAGAAATCCATGGTCCTGGAATCTCAGAATTCCTGGTA
TCTATAGCACTTTTGGTTCCATCCCCCATAGTTGTATATTTTGTGCTCTC
ACAAATTTGCTACCTATATCCTGTTCTTCCTACAAATCGCCTTACTCTTC
ACGTTTCTCTTCCAATACTATATCCACTCCTTCACTAATTGTTTATTCCT
TTTAACCCCTTCCG
TTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTGCCCCATTTTTTA
ATGGGGTTATTTGATTTTCTGGAGTCCATCTAATTGAGTTCTTTATATAT
ATTGGATATCAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCC
AATCCAGAGACTGCCCCACCAGGGGATCCATCCCATAATCAGCCACCAAA
CCCAGACAATATTGTATACACCAGCAAGAATTTGCTGAAAGGACCCTGAT
ATAGCTCTCTCCTGTGATTTTATGCCAGTGCCTGGCAAACACAGAAGTGG
ATGCTCACAGTCATCATCTATTGGATGGAACACAGGGCCCCCAATGGAGG
AACTAGAGAAAGTACCCAAGGAGCTAAAGGGGTCTGCAACCCTGTAGGCG
GAACAACTATATGAACTAGCCAGTACCCCCAGAGCTCGTGTCTCTAGCTG
CATATGGAGCATAAGATGGCCTAGTCAGCTCTCACTGGGCAAAGAGGTCC
CCTGGTCTTGGCTACTTTATATGCCCCAGCAGAGGGGAAGACCCGGTTCT
AGAAGCGTTATTGCTGCGGCATTCTTTCTTTTTTCCCTTCCCTTTCCCTT
TCCTTTTTTTTTTCTCCTTTCTCCTCCCCTTTTCTTCCCTCCCTATTTTT
TTTTTATCCCCTTTTTTTCCCTTCCCCCACTTCCTTGCCTTACCTCTTTT
TCCTTTATTCTTTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_g04.b1 MSMg01no403_g04.b1 CHROMAT_FILE:
MSMg01no403_g04.b1 PHD_FILE: MSMg01no403_g04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:39 2005
         (451 letters)



>mm_chr7_13324114_13324968
          Length = 855

 Score =  772 bits (399), Expect = 0.0
 Identities = 441/457 (96%), Gaps = 8/457 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagagccttcaggactcagaaaagcatacctttccattttcttctttttctcttttccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 cagagccttcaggactcagaaaagcatacctttccattttcttctttttctcttttccaa 596

                                                                       
Query: 61  tcatgctttctctacattttgggctttactt----tctaaatctcccctttcccaccatg 116
           |||||||||| ||||||| ||||||||||||    |||||| ||||||||||||||||||
Sbjct: 595 tcatgctttcgctacattctgggctttactttctctctaaagctcccctttcccaccatg 536

                                                                       
Query: 117 tgggtgactgcttgccattgtggctgacccagatgcctaatgtttcatacagcatggctt 176
           |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 535 tgggtgactgcttgccattgtggccgacacagatgcctaatgtttcatacagcatggctt 476

                                                                       
Query: 177 gctttcttcctcttctttatctcccctttctggg-aggctggtggggttcacaagttgct 235
           |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 475 gctttcttcctcttctttatctcccctttctgggca-gctggtggggttcacaagttgct 417

                                                                       
Query: 236 tgctttggagtttttcttttaaataataaaattgtcctaaagtttctttttgagtccatt 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tgctttggagtttttcttttaaataataaaattgtcctaaagtttctttttgagtccatt 357

                                                                       
Query: 296 ctttaattcacttaatatgaagactaagaacctgtaggagcaactccaatttcctcagta 355
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ctttaattcacttaatgtgaagactaagaacctgtaggagcaactccaatttcctcagta 297

                                                                       
Query: 356 acatgtggtggctttggtgggattccccaatctggcaacaatgtgaggtccaaaaggctt 415
           ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 296 acatgtggtggctctggtgggattccccaacctggcaacaatgtgaggtccaaaaggctt 237

                                                
Query: 416 tgacagttctgtctc-agtggtttttctggctgcagc 451
           ||||||||||||||| | |||||||||||||||||||
Sbjct: 236 tgacagttctgtctcca-tggtttttctggctgcagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 855
Length adjustment: 10
Effective length of query: 441
Effective length of database: 845
Effective search space:   372645
Effective search space used:   372645
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)