BAC Information

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BAC

Clone NameMSMg01-404F07
Chromosome7 (Build37)
Map Location 152,043,164 - 152,235,070
singlet/doubletdoublet
Overlap geneFgf4, Fgf15, Oraov1, Ccnd1
Upstream geneGm498, Shank2, Cttn, Ppfia1, Fadd, Tmem16a, LOC669079, LOC677315, Fgf3
Downstream gene1810010D01Rik, LOC100040049, Tpcn2, Mrgprf, Mrgprd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404F07.T7 (MSMg01no404_f07.b1)MSMg01-404F07.TJ (MSMg01no404_f07.g1)
ACCAG503025AG503026
length830795
length of high quality
(start - end)
224 (70 - 293)119 (68 - 186)
definitionCHROMAT_FILE: MSMg01no404_f07.b1 PHD_FILE: MSMg01no404_f07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:57 2005CHROMAT_FILE: MSMg01no404_f07.g1 PHD_FILE: MSMg01no404_f07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(152,234,848 - 152,235,070)(152,043,164 - 152,043,282)
sequence
TTTGCGGTCGTTAAAAGACTCACTATTCCGAGAGGATCCGCGGAATTCAG
GTCCTTCCGCGTATACAGCAAGCATTCTACCAAACGAGCCTTCTCCTCAG
CCCTGGGAAGTTAATCTTTAAACAGATGGAGTCACCACTATGGGAGTTCA
GATCCAACAAAACAACCAGAGCTGCTTTTAAGGGAGCAGGTGGACCAGGA
TGGAAAGTGGGGGACTCCATCCAGCCCAGCAGGTAGCAGAGACAGATTCA
GCTCCCTCGTGGTGGGGGTCGAGGGTGGGGGTAAGGGGAGGTTTACNTTT
CTTTTCTTCCATTTTTTTTTTTACTACTTTTCTCCTCACTTATTCCCACC
CCCTTTTCTACCTCTCTCCCCTTTACCCCCCTCTAATTTTTCTTTCCTTT
ATTCCTTCCCCCCACTCACCCTCATTATTTTCCCCCTTCCCTCCTTTTCT
CTTTTTTTTTTTCCCACTTTTATTCTACATTTTACCTTTCTTTCCCCCCA
TATTCCACCTCCATTCTACCCTTCCCCCCCCTCTTTCCTCTTTTTCCCCC
TCACCACACCCCCCCTTTTCTACTCCTTCCCCCCCCTCATTCCTTCCTTC
CCCCCCCCCCCTTTTTTTTTCCCTTTCTTCCTCCCCTCCTTTTTCCCCAT
TTTCCCCCCTTTCCCTTTCCTTTTCTTTCCCCCCCTCTCTCTTCACCATT
TTTCTCTTCCCCTTTCTTTCCCCCTCTTTCCTCCTACTTTCCTTTCCCCC
CCCCACTTTTTTTTCCCCTCTTTTCTATCCCTATCTTTTTTCTTTCTTTC
CTCCCCCCCTTTCTTTTTTTTTTTTCCCCC
TTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAAGCCGTGAGCCAGCCCTGGCACAAAGGGCCA
CACACTGCTAGGCTGATCCCTCGAGTCCCTAGAGCCCTAAGCTCTACCGG
ATGTGGCTCAAAGGGGTGGGGGTTGGGGGGGGGAGAATTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTCTTTCCTCTTCTTTTTTTTTTCTTTTTT
TTTTTTTTTTTTTTTTTTTCTTTTTTACACTTTCTTTTCTTTTTTCCATT
TTCTTTTTTTTTTTCCCCCCCCTTTTCTCCTTTTTTTTTTTTTTTTTTTT
TTTCCCTTTTTTCTTCTCTTTTTTCTTTTTCTTTTTTTTTTTTTTTTTTT
TTTTCCTTTTTTCTTTTCTTTTTTTTTTTTCTTTTCCTTTTTCTTATTTT
TTTTTTTTTTTTTTTTCCTCCTTCTTTTTATTTTCTTTTTTTTCTCTTTT
TTTTTTTTATTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTCCTCTTTTT
TTTTTTTTTTTTCTCCCCTTTTCTTTTTTTCCTCCTTTTTTTTTTTTTTT
TATTCCTTTTATTTCTTTTTATCCTCTTTTTTTTTTTTTTTTTCTTATTC
CTCTTTTTATATTTCTCCTTTTATTTTTTCCCCCTCTCTTTTTTTTTTCT
ATTCTTCTTTTTTTTTTTCCTTTTTCTCATTCTTATCTGCTTTTTTCTTT
TTTCTTTTTTTTTTTATTTCCCTCCTTCTATTTTTTTTCTTCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_f07.b1 MSMg01no404_f07.b1 CHROMAT_FILE:
MSMg01no404_f07.b1 PHD_FILE: MSMg01no404_f07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:57 2005
         (224 letters)



>mm_chr7_152234648_152235271
          Length = 624

 Score =  431 bits (223), Expect = e-125
 Identities = 223/223 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagcattctaccaaacgagccttctcctcagccctgggaagttaatctttaaacagatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 aagcattctaccaaacgagccttctcctcagccctgggaagttaatctttaaacagatgg 364

                                                                       
Query: 61  agtcaccactatgggagttcagatccaacaaaacaaccagagctgcttttaagggagcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 agtcaccactatgggagttcagatccaacaaaacaaccagagctgcttttaagggagcag 304

                                                                       
Query: 121 gtggaccaggatggaaagtgggggactccatccagcccagcaggtagcagagacagattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gtggaccaggatggaaagtgggggactccatccagcccagcaggtagcagagacagattc 244

                                                      
Query: 181 agctccctcgtggtgggggtcgagggtgggggtaaggggaggt 223
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 agctccctcgtggtgggggtcgagggtgggggtaaggggaggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 624
Length adjustment: 9
Effective length of query: 215
Effective length of database: 615
Effective search space:   132225
Effective search space used:   132225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no404_f07.g1 MSMg01no404_f07.g1 CHROMAT_FILE:
MSMg01no404_f07.g1 PHD_FILE: MSMg01no404_f07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:58 2005
         (119 letters)



>mm_chr7_152042964_152043482
          Length = 519

 Score =  230 bits (119), Expect = 2e-65
 Identities = 119/119 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagccgtgagccagccctggcacaaagggccacacactgctaggctgatccctcgagtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagccgtgagccagccctggcacaaagggccacacactgctaggctgatccctcgagtc 260

                                                                      
Query: 61  cctagagccctaagctctaccggatgtggctcaaaggggtgggggttgggggggggaga 119
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctagagccctaagctctaccggatgtggctcaaaggggtgggggttgggggggggaga 319


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 119
Length of database: 519
Length adjustment: 8
Effective length of query: 111
Effective length of database: 511
Effective search space:    56721
Effective search space used:    56721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)