BAC Information

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BAC

Clone NameMSMg01-404H21
Chromosome7 (Build37)
Map Location 84,613,669 - 84,614,090
singlet/doubletsinglet
Overlap genenone
Upstream geneEG244071
Downstream geneA330068G13Rik, Ntrk3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404H21.T7 (MSMg01no404_h21.b1)MSMg01-404H21.TJ (MSMg01no404_h21.g1)
ACCAG503148AG503149
length777767
length of high quality
(start - end)
470 (30 - 499)477 (62 - 538)
definitionCHROMAT_FILE: MSMg01no404_h21.b1 PHD_FILE: MSMg01no404_h21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:11 2005CHROMAT_FILE: MSMg01no404_h21.g1 PHD_FILE: MSMg01no404_h21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGCCGCTATACGACTCCTATATTCAGAGGATCCGCGGAATTCAGTCTCC
TTACTTAACAAAAAACCAGTAAAATATGTGAGTAGAAAAATATACACCAT
GCTCAAAGTTGGAGTAGCCTCATTAATTTCAGAACAGAATAGACTTTAGA
GCATGAAAGGATATCAAAGATAAAGAAGAAACCACTATATAATGATAAAT
GAGTTGATTCTCCAGTAACACTCAATGTTCAAACTGCATATTCCTAACAA
CATCACTTCAAAACACATAAAGCAAAATGCAACAAAACTAAAACACAGAC
AAAGCCACTATTATAGTTAAGCACTTTAAAATATGTTAGTAATTTCTAGG
TTGGCAAGACTGAAAATTAGGAAAGGCAGAAATAAGTTTAGGACATTCTT
GATGAACTTGACATAACTGGCCTTGAAAGAGCACTCCCTCCATCACTACC
AAATCACACATTCTTTCCAAGCTCACACAGAATGTTTAGGAAGATAAACC
ACAGTCTGGGACATCAAATGCTATATAACAGATATGAAAAATAAAAACCA
TCCCCAATATGTTCTCAGACCACAGTGGTATTAAGCTTACAATCACCCAC
CGAGAGAGTGGGACCTGCTTCCAATATTTTTGGAGTAAACCAACCTACTT
GGAATAAAATGTGGCCCAAAAATCAACCCTCTTTAAAAAATGGAATTTTT
TTTCCAAACCGAAATGAGAATCCCCCTTTTTAAATTTATGGGGCGAGCCC
CCAAAAGCCAGTAGAAATAGTTGGCCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXAGGAGCCTATACTGAGACATGTGACACACACACACACAC
ACACACACACACACACACACACACACACACACACACACAATTACACATGT
ACCAATGATCTCACCTCACATGTGTTGTGAGTCATACTTGTGCACATATG
GTATAATTTCAGATCACCATCCTGCTATGTTTGAGATGCAATCATTCTTT
CAATGATGTCTACAATCTAACTTCAGATATATCTTCCAGTATCGTATTGT
ACTCATTGTATTTATGACTTTCTTAATCATTTCACTTATGTACAACTGTG
TCACTATGCTCATTATATCTTCCCTATATCTTGGTATATTGCCATAGACT
TTGAAATGGAATGGGTTTTATTTTTCTTAATTTTCTCTGTATAATTTTTA
ATATTTCACTATGCTGGTTTCGTTGGCAATCTGACAGCTTTGAATATGCT
GCATAGAGTAATATGATGTTATCTCTTTGTTTCTAGATTCAAATGCCCAC
GTGCAATGGAACTTTAGGAAGATATCCACTATGTTTTTCAGTGTTGTAAT
CAAGCTGCTGTTGGCCATAATGTACTCTTGCCTGGAGTTGTAAAGGGTAG
AATATACTTTCCACATCATTTTGTTTAATGGAGGAAAAAAACTGTTTTTG
AAACCATGGGTTTGTAAATTTTTGGGGAAGGCCACTTACAGCGGAAGCAA
TGAAAAGCCCCCTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_h21.g1 MSMg01no404_h21.g1 CHROMAT_FILE:
MSMg01no404_h21.g1 PHD_FILE: MSMg01no404_h21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:11 2005
         (477 letters)



>mm_chr7_84613391_84614267
          Length = 877

 Score =  801 bits (414), Expect = 0.0
 Identities = 420/422 (99%)
 Strand = Plus / Minus

                                                                       
Query: 56  acacacacacacacacacacacaattacacatgtaccaatgatctcacctcacatgtgtt 115
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 acacacacacacacacacacacaattacacatgtaccaatgatctcacctcacatgtgtt 641

                                                                       
Query: 116 gtgagtcatacttgtgcacatatggtataatttcagatcaccatcctgctatgtttgaga 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 gtgagtcatacttgtgcacatatggtataatttcagatcaccatcctgctatgtttgaga 581

                                                                       
Query: 176 tgcaatcattctttcaatgatgtctacaatctaacttcagatatatcttccagtatcgta 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 tgcaatcattctttcaatgatgtctacaatctaacttcagatatatcttccagtatcgta 521

                                                                       
Query: 236 ttgtactcattgtatttatgactttcttaatcatttcacttatgtacaactgtgtcacta 295
           ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ttgcactcactgtatttatgactttcttaatcatttcacttatgtacaactgtgtcacta 461

                                                                       
Query: 296 tgctcattatatcttccctatatcttggtatattgccatagactttgaaatggaatgggt 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tgctcattatatcttccctatatcttggtatattgccatagactttgaaatggaatgggt 401

                                                                       
Query: 356 tttatttttcttaattttctctgtataatttttaatatttcactatgctggtttcgttgg 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tttatttttcttaattttctctgtataatttttaatatttcactatgctggtttcgttgg 341

                                                                       
Query: 416 caatctgacagctttgaatatgctgcatagagtaatatgatgttatctctttgtttctag 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 caatctgacagctttgaatatgctgcatagagtaatatgatgttatctctttgtttctag 281

             
Query: 476 at 477
           ||
Sbjct: 280 at 279


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)