Query= MSMg01no404_p20.b1 MSMg01no404_p20.b1 CHROMAT_FILE:
MSMg01no404_p20.b1 PHD_FILE: MSMg01no404_p20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:51 2005
(458 letters)
>mm_chr7_99107866_99108726
Length = 861
Score = 818 bits (423), Expect = 0.0
Identities = 447/459 (97%), Gaps = 11/459 (2%)
Strand = Plus / Plus
Query: 7 gaattctttgttcttc----gacattgataactacctttgtttataaattcctgtcctga 62
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattctttgttc---aaaagacattgataactacctttgtttataaattcctgtcctga 263
Query: 63 ctgtgggtgctagggatcagcatattaggggaggtgttgcctgagttttttttttttt-- 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctgtgggtgctagggatcagcatattaggggaggtgttgcctgagttttttttttttttt 323
Query: 121 cttttttcaggctgcacatctgatcttaaagtggcaggcccaggatctaactgcttttat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cttttttcaggctgcacatctgatcttaaagtggcaggcccaggatctaactgcttttat 383
Query: 181 atcactgtggaaactattctccaaaagacaaagagaacaactagacaaaccctaaatatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atcactgtggaaactattctccaaaagacaaagagaacaactagacaaaccctaaatatg 443
Query: 241 agcactaaggatagactacttttgatcttctattaggcctctgacctaactgctatattt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agcactaaggatagactacttttgatcttctattaggcctctgacctaactgctatattt 503
Query: 301 ccatttggagcctgtgtgtccactttgctctaagcttagcactataagtgtcattttatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ccatttggagcctgtgtgtccactttgctctaagcttagcactataagtgtcattttatt 563
Query: 361 cccatctgtagaatggatccaattattagagttacctagagagctacaaagaaaataaat 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 564 cccatctgtagaatggatccaattattagagttacctagagagctacaaagaaaataa-t 622
Query: 421 tatttgatttgtttaaaa-tacacaacagtaactgaaga 458
|||||||||||||||||| ||||||| ||||||||||||
Sbjct: 623 tatttgatttgtttaaaaatacacaatagtaactgaaga 661
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 861
Length adjustment: 10
Effective length of query: 448
Effective length of database: 851
Effective search space: 381248
Effective search space used: 381248
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no404_p20.g1 MSMg01no404_p20.g1 CHROMAT_FILE:
MSMg01no404_p20.g1 PHD_FILE: MSMg01no404_p20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:51 2005
(492 letters)
>mm_chr7_99281476_99282369
Length = 894
Score = 826 bits (427), Expect = 0.0
Identities = 465/479 (97%), Gaps = 4/479 (0%)
Strand = Plus / Minus
Query: 17 aagaactgctcagctaggctctgcttcaggagcccgtacaactttaagataaaacaccgt 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 aagaactgctcagctaggctctgcttcaggagcccgtacaactttaagataaaacaccgt 635
Query: 77 tctacccgcacgctgactgaacttcactcctccagggtgttaaacaactttgaatcttta 136
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 tctacccgcatgctgactgaacttcactcctccagggtgttaaacaactttgaatcttta 575
Query: 137 cttctcagttattggagttaaactacataggatttcagttcattcctttactcttatgta 196
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 cttctcagtgattggagttaaactacataggatttcagttcattcctttactcttatgta 515
Query: 197 ttagaagatatgaagcgaagataaaatgtttgtgagaaagttttcagctaatgaatcata 256
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 514 ttagaatatatgaagcgaagataaaatgtttgtgagaaagttttcagctaatgaagcata 455
Query: 257 tggtgctatgtcacctgcgatcaaggatcctatttttttaattttagtttgaatttaata 316
|||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 454 tggtgctatgtcacctgcaatcaaggatcctattattttcattttagtttgaatttaata 395
Query: 317 tctataggttcttctgaaaatatatcactcaccttatccatttgaaagcatgtaagaaga 376
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tctataggttcttctgaacatatatcactcaccttatccatttgaaagcatgtaagaaga 335
Query: 377 taggctcataaagatgaaatagcacaagatctgcactaggaaacaaatgttccctttaag 436
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 caggctcataaagatgaaatagcacaagatctgcactaggaaacaaatgttccctttaag 275
Query: 437 gtccagagcttggcttatcttaaat---gctttctatggtttggtgtaatttctgacca 492
||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 274 gtccagaacttggcttatcttaaataaagctttctatggtttggtgta-tttctgacca 217
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 894
Length adjustment: 10
Effective length of query: 482
Effective length of database: 884
Effective search space: 426088
Effective search space used: 426088
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
