BAC Information

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BAC

Clone NameMSMg01-405A21
Chromosome7 (Build37)
Map Location 127,413,226 - 127,413,630
singlet/doubletsinglet
Overlap geneAbca14
Upstream geneLOC100042871, Gp2, Umod, 1700007B13Rik, C730027J19Rik, Acsm2, Acsm1, BC048390, Thumpd1, EG434233, Acsm3, Exod1, 2610020H08Rik, Dcun1d3, LOC100043399, LOC100043396, Lyrm1, Dnahc3, Tmem159, Zp2, Anks4b, Crym
Downstream geneAbca15, Abca16, LOC668429, LOC546994, LOC100042914, E130201H02Rik, LOC637957, Uqcrc2, 4930408O21Rik, BC030336, E030013G06Rik, EG436008, LOC100043426, Eef2k, Polr3e, Cdr2, 4933427G17Rik, EG668548, Mettl9, LOC668456, Igsf6, Otoa, LOC668556
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405A21.T7 (MSMg01no405_a21.b1)MSMg01-405A21.TJ (MSMg01no405_a21.g1)
ACCAG503576AG503577
length807788
length of high quality
(start - end)		405 (70 - 474)425 (78 - 502)
definitionCHROMAT_FILE: MSMg01no405_a21.b1 PHD_FILE: MSMg01no405_a21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:56 2005CHROMAT_FILE: MSMg01no405_a21.g1 PHD_FILE: MSMg01no405_a21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAAAGTCAGTGCCGTTGACACACTGAGACAGAGAAATTTCCCTCA
GTTTTCAGTGTCTTGAAAGTATGTCATGCCCTTCTAACTACTGCAGCATA
TCCTAAGACCATGAATAGCTAGGCAAGTTCCATACAACTAAAATGTCAAA
ATAAGTCTTAATACAATCTAAAAATTGAAACCACATAAATATCCTTTAAG
ATCTTGATAGAATAAAACTGAAAATCAGTAACAGCAAAAAATATCATGAA
ATTCATGTATATAGTATAAATAACATACTCTTAAGGGATTGTTGGGACAA
AAAATTGTAAAGGAAATAAAAGATCCAAATAAAAATAAAATAATACATCA
AAATTTATCAGATATGGTGAAAAATGCTAAAAGAAAAAATTTAACTGAGA
GAGAAAAGCAATTGATAAACGTAGCCTTACGTTTAAAAACATTTCCCCCT
AACCTTACATTTTTATGTAACCCGATAAATACAATGAGCCACTGCTTATT
AAAGGGAAAAAAGAAAAAAAGAGCCCCGAGCAAGAGAAACAGGACGGAAA
AAAGGCCTAACCCCAACCCCCAGTTAGGGAAGGGCATTAATCCCCTTTTC
TTGAAATTAAAATTTACCAGAAGGGCCTTCCTACCCTGGTTGCCAGGTAA
AAATCCCCAAGGGAAAAACTCTGTTGGGTGTATTTCCCCCAAAAAAATTA
AAAGTTTAAATAATCTCGGGGGGGACAAAAAATAAACCTGGCCCAAAACC
CGCGCCC

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTACCTGAGGAATACCGAATAGC
AGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGC
AAATCAAAACAACCCTGAGATTCCACCTCATACCAGTCAGAATGGCTAAG
ATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGGGA
AACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGA
AATCCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGAT
CCAGCAATACCTCTCCTGTGCATATATCCAGAAGATGTCCCAACAGGTAA
AAAGGACACATGCTCCACTATGTTCATAACAGCCTTATTTATAATCGCCA
GAAGCTGGAAAGTATCCAGATGCCCCTCAACAGAGGAATGGATACAGAAA
ATGTGGTACATTTACACAATGGAATACTACTCAGCTATTAAAAAGAATGA
ATTTATGAAAATCCTAGGCCAATGGATGGACCTTGGAGGGCATCTTCCTG
AATGAGGTAAACTTTTCCTTAAAGAATTCACCCACTATGTTACCCCTTGA
TAATCGGGAATTACCCCTATACCCCATGTACCCTCTATTTTAACATTTTT
TTTTTTTCTTTTTGCGCCCCCTCCAAAAAGGAATGATATTGTGGCCCCTT
TTCTCCCTCCTTTATTTTTTTCGCCAAATTACCTTTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_a21.b1 MSMg01no405_a21.b1 CHROMAT_FILE:
MSMg01no405_a21.b1 PHD_FILE: MSMg01no405_a21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:56 2005
         (405 letters)



>mm_chr7_127413026_127413830
          Length = 805

 Score =  783 bits (405), Expect = 0.0
 Identities = 405/405 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgacacactgagacagagaaatttccctcagttttcagtgtcttgaaagtatgtcatgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgacacactgagacagagaaatttccctcagttttcagtgtcttgaaagtatgtcatgc 260

                                                                       
Query: 61  ccttctaactactgcagcatatcctaagaccatgaatagctaggcaagttccatacaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccttctaactactgcagcatatcctaagaccatgaatagctaggcaagttccatacaact 320

                                                                       
Query: 121 aaaatgtcaaaataagtcttaatacaatctaaaaattgaaaccacataaatatcctttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaatgtcaaaataagtcttaatacaatctaaaaattgaaaccacataaatatcctttaa 380

                                                                       
Query: 181 gatcttgatagaataaaactgaaaatcagtaacagcaaaaaatatcatgaaattcatgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatcttgatagaataaaactgaaaatcagtaacagcaaaaaatatcatgaaattcatgta 440

                                                                       
Query: 241 tatagtataaataacatactcttaagggattgttgggacaaaaaattgtaaaggaaataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatagtataaataacatactcttaagggattgttgggacaaaaaattgtaaaggaaataa 500

                                                                       
Query: 301 aagatccaaataaaaataaaataatacatcaaaatttatcagatatggtgaaaaatgcta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagatccaaataaaaataaaataatacatcaaaatttatcagatatggtgaaaaatgcta 560

                                                        
Query: 361 aaagaaaaaatttaactgagagagaaaagcaattgataaacgtag 405
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaagaaaaaatttaactgagagagaaaagcaattgataaacgtag 605


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space:   315216
Effective search space used:   315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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