BAC Information

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BAC

Clone NameMSMg01-405E02
Chromosome7 (Build37)
Map Location 105,505,121 - 105,666,477
singlet/doubletdoublet
Overlap geneTsku, LOC100040269, Gucy2d, LOC100040721, EG434215
Upstream geneAlg8, Ndufc2, Thrsp, Kctd14, Ints4, 1810020D17Rik, Rsf1, LOC622994, LOC100040211, Clns1a, Aqp11, LOC100040594, Pak1, Gdpd4, Myo7a, Capn5, Omp, B3gnt6, Phca
Downstream geneA630091E08Rik, 2210018M11Rik, LOC100040769, Prkrir, Wnt11, LOC666978, Uvrag, EG666529, Dgat2, Mogat2, Mtap6, Serpinh1, Gdpd5, 2810406K13Rik, Rps3, Rnu15-b, EG449630
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405E02.T7 (MSMg01no405_e02.b1)MSMg01-405E02.TJ (MSMg01no405_e02.g1)
ACCAG503730AG503731
length758763
length of high quality
(start - end)
435 (44 - 478)238 (80 - 317)
definitionCHROMAT_FILE: MSMg01no405_e02.b1 PHD_FILE: MSMg01no405_e02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:11 2005CHROMAT_FILE: MSMg01no405_e02.g1 PHD_FILE: MSMg01no405_e02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,666,052 - 105,666,477)(105,505,121 - 105,505,358)
sequence
NTTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAAGAGGATCCG
CGGAATTCCTGCCTCCCTTTCCCAAGCGCTGTGATTACAGGCACACACTG
ACACCTCGTTCTGATCCCTGATTTGAGGCGCTTCCTCATTTGCAGTTCTG
CCTCTTACTGAAGATGCTGAGCAGACTGTCCCTGCTATCTGCATCAACAT
AGGTCAGTTGACACCCTTGTAGCATAGAAGTGATCTGTACAAAAATATGT
GAAGGTCTGGTGAGATTGGATCTTTTTATAATCTGAAAAATTGTTACTAC
GTTTTAATTTATGTAAACCTGTGTGTGTAGATCAGAGAATAACTTCTTTC
CTTCTACCATGTGGGTCTCAGCTCACAAGTCATGAGCTTTGGCAGCAAGT
ACCCATTGAGCCATCTCACTAGACTGTGGCACTGGGTCTTACGGGTATGA
GGTAAAGTTACAGACAGTAAAATGTGGGTAAAACCATAATAGGATAAACC
AGAATATCAGAAATTCCAAAGAAAAAGATGACCATCTCTTCTCTTCTCTT
CNCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCCTCTCTTCTCTTCTCTT
CTCTTCTCTTCTTTCTTCCTTTCCTTTTCCTTTTCCACACAGGGCTTTCT
CCGTATAGTCCTTGGCTGCCCCTAGTATCTACTCTTACTCTTGATTCTTA
CCTTATAACGTTTGAATAACGATTTGAACTCTCTTTTTCTTCCCTTTTTT
GTGCCCTT
TTCCGATGACTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCTTGTGAGCTGCAGAGC
CCTTGGAGATGATGGTTGACTGAGGCCCAGAGGGGCATTAAGGGAAATGC
AGACAGCATAGCAAGACCCAGTAGCTGGGGCCCACCGCCTCACACGGTCC
TAGCATCACACACATCTACTGGCCTGCCCCTGCCTGGTGGAACAAATCGC
TCTCTGTCTCCACAGTCTCCCACTACCCCTCCCTCCTGGCCTCTCACACC
TCAGGCTACCAACAGGCCTCCTTTAGAGGGTACTGAGAAAATTCAAATTT
CAAACATAAGGTGCCAGCAGCTTGGGACAGAGCACCTCCTTTTTTAACCT
AGGTATCTTTCCCTAACTGAAGTCAAAGTCAGACTTGGTGGCTGGGTGTC
AGCAACAGAGACCCAGCAAGAAAGCCACAGGGTTGGCTACTATAACCAGA
CCCCCACATGATATCTTCCAACCCATAGTTGGTCTCTATTTGCAAATTTG
GCAGTGTGGACTGTTGCTTATAGCTGTTATTTGTTGCGCTGCAATGACCC
GTCTACTTATCCCTTCCTCTGTTTTTATATACGTCGATTTACGCCCCTTT
TATTTTTCCTTTCCCCCTGCCTCTTTTTGTCTACCCTATTTTTCCCTATT
TTTTTCCTTGTCTCCTCATTTTCTATGCTCTATTTTCTTTTTTCCTCTCC
CTTCCATTTACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_e02.b1 MSMg01no405_e02.b1 CHROMAT_FILE:
MSMg01no405_e02.b1 PHD_FILE: MSMg01no405_e02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:11 2005
         (435 letters)



>mm_chr7_105666001_105666835
          Length = 835

 Score =  770 bits (398), Expect = 0.0
 Identities = 419/426 (98%)
 Strand = Plus / Minus

                                                                       
Query: 10  gaattcctgcctccctttcccaagcgctgtgattacaggcacacactgacacctcgttct 69
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gaattcctgcctccatttcccaagcgctgtgattacaggcacacactgacacctcgttct 418

                                                                       
Query: 70  gatccctgatttgaggcgcttcctcatttgcagttctgcctcttactgaagatgctgagc 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gatccctgatttgaggcgcttcctcatttgcagttctgcctcttactgaagatgctgagc 358

                                                                       
Query: 130 agactgtccctgctatctgcatcaacataggtcagttgacacccttgtagcatagaagtg 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 agactgtccctgctatctgcatcaacataggtcagttgacacccttgtagcatagaagtg 298

                                                                       
Query: 190 atctgtacaaaaatatgtgaaggtctggtgagattggatctttttataatctgaaaaatt 249
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 297 aactgtacaaaaatatgtgaaggtctggtgagattggatctttttataatctgaaaaatc 238

                                                                       
Query: 250 gttactacgttttaatttatgtaaacctgtgtgtgtagatcagagaataacttctttcct 309
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 237 gttactacgttttaatttatgtaaacctgtgtgtgtaggtcagagaataacttctttcct 178

                                                                       
Query: 310 tctaccatgtgggtctcagctcacaagtcatgagctttggcagcaagtacccattgagcc 369
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 tctaccgtgtgggtctcagctcacaagtcatgagctttggcagcaagtacccattgagcc 118

                                                                       
Query: 370 atctcactagactgtggcactgggtcttacgggtatgaggtaaagttacagacagtaaaa 429
           |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 atctcactagcctctggcactgggtcttacgggtatgaggtaaagttacagacagtaaaa 58

                 
Query: 430 tgtggg 435
           ||||||
Sbjct: 57  tgtggg 52


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space:   351876
Effective search space used:   351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no405_e02.g1 MSMg01no405_e02.g1 CHROMAT_FILE:
MSMg01no405_e02.g1 PHD_FILE: MSMg01no405_e02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:11 2005
         (238 letters)



>mm_chr7_105504921_105505558
          Length = 638

 Score =  445 bits (230), Expect = e-129
 Identities = 236/238 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggcttgtgagctgcagagcccttggagatgatggttgactgaggcccagaggggcatt 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggctcgtgagctgcagagcccttggagatgatggttgactgaggcccagaggggcatt 260

                                                                       
Query: 61  aagggaaatgcagacagcatagcaagacccagtagctggggcccaccgcctcacacggtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagggaaatgcagacagcatagcaagacccagtagctggggcccaccgcctcacacggtc 320

                                                                       
Query: 121 ctagcatcacacacatctactggcctgcccctgcctggtggaacaaatcgctctctgtct 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctagcatcacatacatctactggcctgcccctgcctggtggaacaaatcgctctctgtct 380

                                                                     
Query: 181 ccacagtctcccactacccctccctcctggcctctcacacctcaggctaccaacaggc 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccacagtctcccactacccctccctcctggcctctcacacctcaggctaccaacaggc 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)