Query= MSMg01no405_k06.b1 MSMg01no405_k06.b1 CHROMAT_FILE:
MSMg01no405_k06.b1 PHD_FILE: MSMg01no405_k06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:41 2005
(470 letters)
>mm_chr7_117677317_117678186
Length = 870
Score = 808 bits (418), Expect = 0.0
Identities = 430/436 (98%), Gaps = 4/436 (0%)
Strand = Plus / Minus
Query: 39 acttacctaaataagtaagtaag----taagtaaataaataaataaacaacctttgtcct 94
||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 870 acttacctaaataagtaagtaagtaaataaataaataaataaataaacaacctttgtcct 811
Query: 95 aaaatatcctatgatgaggaaaaaacagctaggataaaatagtgcaaatcatatacctaa 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 aaaatatcctatgatgaggaaaaaacagctaggataaaatagtgcaaatcatatacctaa 751
Query: 155 caaaagacttagaaatacattaaaaactaaacatcaactttaaacaataataatagaaca 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 caaaagacttagaaatacattaaaaactaaacatcaactttaaacaataataatagaaca 691
Query: 215 ttctatttagaaaatgaatatttctgtctccccattcatttatttttttctttgtggtaa 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 ttctatttagaaaatgaatatttctgtctccccattcatttatttttttctttgtggtaa 631
Query: 275 aagcatccagtctttcctgaggcgagcactctttggagtccagatgagatcacaaatcat 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 aagcatccagtctttcctgaggcgagcactctttggagtccagatgagatcacaaatcat 571
Query: 335 gtgacagaggcttgaccagaatctctttttgattggttactgagtttcagtagcagtatt 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 gtgacagaggcttgaccagaatctctttttgattggttactgagtttcagtagcagtatt 511
Query: 395 tgggcagctagtagatatacccagtgtagagattaatcttgtgagagactgaggttcatc 454
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 tgggcagctggtagatatacccagtgtagagattaatcttgtgagagactgaggttcatc 451
Query: 455 atgatggatgatgtcc 470
||||||||||||||||
Sbjct: 450 atgatggatgatgtcc 435
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space: 395600
Effective search space used: 395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no405_k06.g1 MSMg01no405_k06.g1 CHROMAT_FILE:
MSMg01no405_k06.g1 PHD_FILE: MSMg01no405_k06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:41 2005
(535 letters)
>mm_chr7_117500983_117501918
Length = 936
Score = 965 bits (499), Expect = 0.0
Identities = 527/537 (98%), Gaps = 3/537 (0%)
Strand = Plus / Plus
Query: 1 ttgcaacatgggttatgggaaccaaacttatgtcctctgcaaggacagtacatgcttagt 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgcaacatgggttataggaaccaaacttatgtcctctgcaaggacagtacatgcttagt 260
Query: 61 ccatccttgagtctctctccatgattacttacttctgttacataaaacctttatagcttg 120
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 261 ccatccttgagtctctctccatggttacttacttctgttacataaaaccgttatagcttg 320
Query: 121 ttgtatttttctgtaagtctacttggattactcttggtcttctgtattgctatgt--aaa 178
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 321 ttgtatttttctgtaagtctacttggactactcttggtcttctgtattgctatgtttaaa 380
Query: 179 gtcttataagcactttctcagtcttcattggtgggctttacactgaggcttcaatgtatc 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcttataagcactttctcagtcttcattggtgggctttacactgaggcttcaatgtatc 440
Query: 239 tacaggtcaactcctagaggaactgcatatattagaatatggattatctaagaacttgaa 298
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 tacaggtcaactcctggaggaactgcatatattagaatatggagtatctaagaacttgaa 500
Query: 299 atattaatttatttgaacttttaatgatcttaatagtttgaatgtttcatagtgtagtgc 358
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atatcaatttatttgaacttttaatgatcttaatagtttgaatgtttcatagtgtagtgc 560
Query: 359 tgaacatcttccattatattttctctgaagtagtgagcatttcttaatgtcattgtttat 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaacatcttccattatattttctctgaagtagtgagcatttcttaatgtcattgtttat 620
Query: 419 agaactggcattagctaaatatcatcatttaaaaaattctttttgtaaaagtttggtttt 478
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 621 agaactggcattagctaaatatcatcatt-aaaaaattctttttgtaaaagtttggtttt 679
Query: 479 gattgtcatctgactagttattgcatcaccaatttatatcacttaccaaatttactt 535
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gattgtcatctgactagttattgcatcaccaatttatatcacttaccaaatttactt 736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 936
Length adjustment: 10
Effective length of query: 525
Effective length of database: 926
Effective search space: 486150
Effective search space used: 486150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
